miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6291 3' -58.4 NC_001844.1 + 101202 0.66 0.844967
Target:  5'- aGGGGuuggAGGCuGUGGuugaacuggcGAgGugUACCGCCa -3'
miRNA:   3'- -CCCU----UCCGcCGCC----------CUaCugAUGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 44823 0.66 0.828923
Target:  5'- cGGGGccGCuGCGGGuuugGACgggccgggGCCGCUg -3'
miRNA:   3'- -CCCUucCGcCGCCCua--CUGa-------UGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 139177 0.66 0.803598
Target:  5'- uGGGAGGGgGuacCGGGggGAaauaUACaCGCCc -3'
miRNA:   3'- -CCCUUCCgCc--GCCCuaCUg---AUG-GCGG- -5'
6291 3' -58.4 NC_001844.1 + 114757 0.67 0.785963
Target:  5'- uGGAGccGGCGGCGGGGgaGCUcCCGg- -3'
miRNA:   3'- cCCUU--CCGCCGCCCUacUGAuGGCgg -5'
6291 3' -58.4 NC_001844.1 + 92535 0.67 0.776944
Target:  5'- cGGGggGGCGGgGGGaAUGucgaACUcauCCauGCUa -3'
miRNA:   3'- -CCCuuCCGCCgCCC-UAC----UGAu--GG--CGG- -5'
6291 3' -58.4 NC_001844.1 + 142488 0.67 0.776035
Target:  5'- -uGAAGGCGGUaggcuugGGGGUucugguaccagGACccgcgGCCGCCg -3'
miRNA:   3'- ccCUUCCGCCG-------CCCUA-----------CUGa----UGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 116239 0.71 0.57296
Target:  5'- cGGGAcGGGCucUGGGAUGACcccgaaauaguucugGCCGCCu -3'
miRNA:   3'- -CCCU-UCCGccGCCCUACUGa--------------UGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 120864 0.71 0.55235
Target:  5'- uGGGAGGGuUGGUGGGGacaucUGccucGCUAUCGCUu -3'
miRNA:   3'- -CCCUUCC-GCCGCCCU-----AC----UGAUGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 143263 0.73 0.449161
Target:  5'- cGGGGAGGCGuaGGG-UGcCgguCCGCCc -3'
miRNA:   3'- -CCCUUCCGCcgCCCuACuGau-GGCGG- -5'
6291 3' -58.4 NC_001844.1 + 114411 0.74 0.389297
Target:  5'- aGGGAGGGCGcGCGcuuuGGAgagcUGGCUGCCaGCg -3'
miRNA:   3'- -CCCUUCCGC-CGC----CCU----ACUGAUGG-CGg -5'
6291 3' -58.4 NC_001844.1 + 142622 0.75 0.36529
Target:  5'- cGGGAGGGCaGGCGGGAgaggGAUc-UCGCUu -3'
miRNA:   3'- -CCCUUCCG-CCGCCCUa---CUGauGGCGG- -5'
6291 3' -58.4 NC_001844.1 + 140846 1.14 0.000909
Target:  5'- gGGGAAGGCGGCGGGAUGACUACCGCCg -3'
miRNA:   3'- -CCCUUCCGCCGCCCUACUGAUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.