miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6291 5' -57.2 NC_001844.1 + 130073 0.66 0.867019
Target:  5'- uGGGCGUGUagcagCCACggUUCGAACGUCa -3'
miRNA:   3'- uCCCGCGCAgca--GGUG--GGGUUUGUAG- -5'
6291 5' -57.2 NC_001844.1 + 143253 0.66 0.850953
Target:  5'- uAGGGUGCcg-GUCCGCCCCcucccugcgaggaGAccgGCAUCu -3'
miRNA:   3'- -UCCCGCGcagCAGGUGGGG-------------UU---UGUAG- -5'
6291 5' -57.2 NC_001844.1 + 69462 0.66 0.842993
Target:  5'- uGGGCGUGUCucuagccuuugagGUCaACCUCGGACAg- -3'
miRNA:   3'- uCCCGCGCAG-------------CAGgUGGGGUUUGUag -5'
6291 5' -57.2 NC_001844.1 + 85176 0.66 0.827353
Target:  5'- gGGGGUGagcaauaaaaCGUCGUCUauuGCCCCcGACGa- -3'
miRNA:   3'- -UCCCGC----------GCAGCAGG---UGGGGuUUGUag -5'
6291 5' -57.2 NC_001844.1 + 129332 0.67 0.801385
Target:  5'- uGGGUGCGUUGUUgGCCUgG-ACAUg -3'
miRNA:   3'- uCCCGCGCAGCAGgUGGGgUuUGUAg -5'
6291 5' -57.2 NC_001844.1 + 144371 0.67 0.7833
Target:  5'- cGGGUGCGcUC-UCCGgCCCGggUGUCc -3'
miRNA:   3'- uCCCGCGC-AGcAGGUgGGGUuuGUAG- -5'
6291 5' -57.2 NC_001844.1 + 80038 0.68 0.774052
Target:  5'- cAGGGCGuCGgCGUCCACUgCuacucuGGCGUUg -3'
miRNA:   3'- -UCCCGC-GCaGCAGGUGGgGu-----UUGUAG- -5'
6291 5' -57.2 NC_001844.1 + 144890 0.71 0.55847
Target:  5'- gGGGGCGCGUCGgaucaacugcgcugCCgggcucACCCCAggGugAUCu -3'
miRNA:   3'- -UCCCGCGCAGCa-------------GG------UGGGGU--UugUAG- -5'
6291 5' -57.2 NC_001844.1 + 137934 0.71 0.554473
Target:  5'- cGGGGgGCGcCGUCCACCagcccCAUCa -3'
miRNA:   3'- -UCCCgCGCaGCAGGUGGgguuuGUAG- -5'
6291 5' -57.2 NC_001844.1 + 104114 0.72 0.544519
Target:  5'- cGGGGCGC-UCGUaUACCCCAuaAGCGUg -3'
miRNA:   3'- -UCCCGCGcAGCAgGUGGGGU--UUGUAg -5'
6291 5' -57.2 NC_001844.1 + 120511 0.72 0.534623
Target:  5'- uAGGGCGUGcaugCGUgUACCCCAuAGCGUa -3'
miRNA:   3'- -UCCCGCGCa---GCAgGUGGGGU-UUGUAg -5'
6291 5' -57.2 NC_001844.1 + 65415 0.72 0.51503
Target:  5'- cGGGGCGCG-CGUCCACaaCCAuuGCAg- -3'
miRNA:   3'- -UCCCGCGCaGCAGGUGg-GGUu-UGUag -5'
6291 5' -57.2 NC_001844.1 + 140810 1.08 0.002333
Target:  5'- aAGGGCGCGUCGUCCACCCCAAACAUCc -3'
miRNA:   3'- -UCCCGCGCAGCAGGUGGGGUUUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.