miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6293 3' -58.2 NC_001844.1 + 83635 0.66 0.7822
Target:  5'- -uGgAGCCAUGCguaACACGGCagAGCUAu -3'
miRNA:   3'- guCgUUGGUACGg--UGUGCCGg-UCGGU- -5'
6293 3' -58.2 NC_001844.1 + 118039 0.67 0.744101
Target:  5'- -cGCAGCCA-GCCAauccaaACGGCCuuuguggguuGGCCc -3'
miRNA:   3'- guCGUUGGUaCGGUg-----UGCCGG----------UCGGu -5'
6293 3' -58.2 NC_001844.1 + 120316 0.67 0.734306
Target:  5'- gCAGCGACCucgGCgAgaGCGGCaGGCCGu -3'
miRNA:   3'- -GUCGUUGGua-CGgUg-UGCCGgUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 122602 0.67 0.734306
Target:  5'- gCGGCGACgCGUgGCCcuCACGGUC-GCCGg -3'
miRNA:   3'- -GUCGUUG-GUA-CGGu-GUGCCGGuCGGU- -5'
6293 3' -58.2 NC_001844.1 + 120138 0.67 0.714456
Target:  5'- gCGGCAGgauCCGUcgcacgccCCACAUGGCUGGCCGu -3'
miRNA:   3'- -GUCGUU---GGUAc-------GGUGUGCCGGUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 59582 0.67 0.70442
Target:  5'- aAGCuGGCCAcguuuuccaaUGCUGCGaGGCCAGCCc -3'
miRNA:   3'- gUCG-UUGGU----------ACGGUGUgCCGGUCGGu -5'
6293 3' -58.2 NC_001844.1 + 136793 0.67 0.70442
Target:  5'- aCAGCAcCCAcGCaa-ACgGGCCGGCCGg -3'
miRNA:   3'- -GUCGUuGGUaCGgugUG-CCGGUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 137819 0.67 0.703413
Target:  5'- cCGGCGGCUcUGaCCAUccggaauACGGCCuGCCGc -3'
miRNA:   3'- -GUCGUUGGuAC-GGUG-------UGCCGGuCGGU- -5'
6293 3' -58.2 NC_001844.1 + 113594 0.68 0.643228
Target:  5'- -cGCAGCCcagaGCCACcgcGCGGCCAaCCGa -3'
miRNA:   3'- guCGUUGGua--CGGUG---UGCCGGUcGGU- -5'
6293 3' -58.2 NC_001844.1 + 115777 0.69 0.622668
Target:  5'- uCGGCGGCCGggGU--CACGGCUAGCUAc -3'
miRNA:   3'- -GUCGUUGGUa-CGguGUGCCGGUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 143731 0.69 0.59088
Target:  5'- aGGCAGCCcgGCgGCggaGCGGUccgcuggCAGCCAg -3'
miRNA:   3'- gUCGUUGGuaCGgUG---UGCCG-------GUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 135095 0.71 0.491269
Target:  5'- aAGCAGCCGUaGCUACcuccucaGCGGC-AGCCAc -3'
miRNA:   3'- gUCGUUGGUA-CGGUG-------UGCCGgUCGGU- -5'
6293 3' -58.2 NC_001844.1 + 144542 0.71 0.454497
Target:  5'- -cGCAGCCAUGCCcCAaGGCCccaucgguuGGCCGc -3'
miRNA:   3'- guCGUUGGUACGGuGUgCCGG---------UCGGU- -5'
6293 3' -58.2 NC_001844.1 + 135510 0.72 0.418386
Target:  5'- cCGGCGACCGUgaggGCCACGCGucGCC-GCCu -3'
miRNA:   3'- -GUCGUUGGUA----CGGUGUGC--CGGuCGGu -5'
6293 3' -58.2 NC_001844.1 + 110892 0.74 0.34389
Target:  5'- cCAGCAGCUGUGCCAgccgcCACugguGGCCcGGCCAg -3'
miRNA:   3'- -GUCGUUGGUACGGU-----GUG----CCGG-UCGGU- -5'
6293 3' -58.2 NC_001844.1 + 137997 1.08 0.001711
Target:  5'- gCAGCAACCAUGCCACACGGCCAGCCAu -3'
miRNA:   3'- -GUCGUUGGUACGGUGUGCCGGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.