miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6294 3' -56.7 NC_001844.1 + 113537 0.66 0.855681
Target:  5'- gGUGUACCUcgccugcggacggcGCGgAgCCGGGGCCGu-- -3'
miRNA:   3'- -CGCAUGGA--------------CGCaUgGGCUCCGGCuuu -5'
6294 3' -56.7 NC_001844.1 + 135491 0.67 0.842168
Target:  5'- cGCGUcgccGCCUGUGUcgccgcGCCUGccgccGGCCGAc- -3'
miRNA:   3'- -CGCA----UGGACGCA------UGGGCu----CCGGCUuu -5'
6294 3' -56.7 NC_001844.1 + 116172 0.67 0.825565
Target:  5'- cCGUACCUGUauuuGUGCCCGAGaUgGggGa -3'
miRNA:   3'- cGCAUGGACG----CAUGGGCUCcGgCuuU- -5'
6294 3' -56.7 NC_001844.1 + 137763 0.67 0.808258
Target:  5'- cCGUACCUGUc--UCgGGGGCCGGGAg -3'
miRNA:   3'- cGCAUGGACGcauGGgCUCCGGCUUU- -5'
6294 3' -56.7 NC_001844.1 + 117699 0.69 0.693467
Target:  5'- uGCGggcauacucgGCCUGCGUcuGCCC--GGCCGAGc -3'
miRNA:   3'- -CGCa---------UGGACGCA--UGGGcuCCGGCUUu -5'
6294 3' -56.7 NC_001844.1 + 88363 0.7 0.673189
Target:  5'- aGCGUcACCaaacUGuUGUACCUGGGGUCGGAAc -3'
miRNA:   3'- -CGCA-UGG----AC-GCAUGGGCUCCGGCUUU- -5'
6294 3' -56.7 NC_001844.1 + 117045 0.7 0.652776
Target:  5'- aGCGacaccgagACCUGCccggggucuCCCGGGGCCGAGu -3'
miRNA:   3'- -CGCa-------UGGACGcau------GGGCUCCGGCUUu -5'
6294 3' -56.7 NC_001844.1 + 136025 1.08 0.002508
Target:  5'- cGCGUACCUGCGUACCCGAGGCCGAAAg -3'
miRNA:   3'- -CGCAUGGACGCAUGGGCUCCGGCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.