miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6294 5' -63.8 NC_001844.1 + 5937 0.66 0.576484
Target:  5'- cCCCCCaGCCCCCAUGGuGCacGGaGUg-- -3'
miRNA:   3'- aGGGGGaCGGGGGUGUC-CG--CC-CAagg -5'
6294 5' -63.8 NC_001844.1 + 109004 0.66 0.547822
Target:  5'- cCCCCCaaccuagaCCaCCAUGGGCGGGUauuaCCa -3'
miRNA:   3'- aGGGGGacg-----GG-GGUGUCCGCCCAa---GG- -5'
6294 5' -63.8 NC_001844.1 + 143169 0.67 0.482962
Target:  5'- gCCUUCUGCCCCgAgGGGCgagccugggucuGGGUggcCCg -3'
miRNA:   3'- aGGGGGACGGGGgUgUCCG------------CCCAa--GG- -5'
6294 5' -63.8 NC_001844.1 + 120344 0.68 0.465103
Target:  5'- gCUCCCgGCCCCCgagACAGGUacGGGcgCa -3'
miRNA:   3'- aGGGGGaCGGGGG---UGUCCG--CCCaaGg -5'
6294 5' -63.8 NC_001844.1 + 134520 0.68 0.456302
Target:  5'- cUCUUCUGCUgCCGCuGGCucGGGUUCUg -3'
miRNA:   3'- aGGGGGACGGgGGUGuCCG--CCCAAGG- -5'
6294 5' -63.8 NC_001844.1 + 117242 0.69 0.389356
Target:  5'- cUUCCCCgGCCCCCGagccccgcGGCGGGa--- -3'
miRNA:   3'- -AGGGGGaCGGGGGUgu------CCGCCCaagg -5'
6294 5' -63.8 NC_001844.1 + 137903 0.7 0.33631
Target:  5'- cCUCCCUGuCCCCCucauCuGGUGGGaaCCc -3'
miRNA:   3'- aGGGGGAC-GGGGGu---GuCCGCCCaaGG- -5'
6294 5' -63.8 NC_001844.1 + 115968 0.71 0.288733
Target:  5'- aCCCCCUGCCCCaCAU---CGGGgacgCCa -3'
miRNA:   3'- aGGGGGACGGGG-GUGuccGCCCaa--GG- -5'
6294 5' -63.8 NC_001844.1 + 141831 0.72 0.263408
Target:  5'- uUCCCCCauaGCgcacccuCCCCGguGGUGGGgcgUCCg -3'
miRNA:   3'- -AGGGGGa--CG-------GGGGUguCCGCCCa--AGG- -5'
6294 5' -63.8 NC_001844.1 + 96102 0.73 0.219732
Target:  5'- aUCCagCCCggacCCCCCGCGGGaCGGGUcCCa -3'
miRNA:   3'- -AGG--GGGac--GGGGGUGUCC-GCCCAaGG- -5'
6294 5' -63.8 NC_001844.1 + 114690 0.74 0.190822
Target:  5'- cCCUCCUGCCCCaaagCGCAGGgUGGGUaCUa -3'
miRNA:   3'- aGGGGGACGGGG----GUGUCC-GCCCAaGG- -5'
6294 5' -63.8 NC_001844.1 + 137183 0.78 0.093707
Target:  5'- gCgCCCUGUCCCCAaAGGCGGGcgCCc -3'
miRNA:   3'- aGgGGGACGGGGGUgUCCGCCCaaGG- -5'
6294 5' -63.8 NC_001844.1 + 135991 1.11 0.000403
Target:  5'- cUCCCCCUGCCCCCACAGGCGGGUUCCg -3'
miRNA:   3'- -AGGGGGACGGGGGUGUCCGCCCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.