Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6295 | 3' | -63 | NC_001844.1 | + | 123711 | 0.68 | 0.515575 |
Target: 5'- aCCACCUagcaCCCUAUCUCCUCgugcaGCUgCCCg -3' miRNA: 3'- gGGUGGA----GGGGUGGAGGGG-----UGGaGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 132515 | 0.7 | 0.394465 |
Target: 5'- cCCUAgUUgCaCCACCUCCCCuaagACCgUCCCa -3' miRNA: 3'- -GGGUgGAgG-GGUGGAGGGG----UGG-AGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135084 | 0.7 | 0.378707 |
Target: 5'- gCUACCUCCUCAgCggcagCCaCCGCCUCUg -3' miRNA: 3'- gGGUGGAGGGGUgGa----GG-GGUGGAGGg -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135766 | 1.08 | 0.000988 |
Target: 5'- nCCACCUCCCCACCUCCCCACCUCCCc -3' miRNA: 3'- gGGUGGAGGGGUGGAGGGGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135791 | 1.11 | 0.00054 |
Target: 5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3' miRNA: 3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135823 | 1.11 | 0.00054 |
Target: 5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3' miRNA: 3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135855 | 1.11 | 0.00054 |
Target: 5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3' miRNA: 3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135887 | 1.11 | 0.00054 |
Target: 5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3' miRNA: 3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 135996 | 0.69 | 0.470345 |
Target: 5'- uCCCGCUcCCCCugC-CCCCACaggcgggUUCCg -3' miRNA: 3'- -GGGUGGaGGGGugGaGGGGUGg------AGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 136660 | 0.66 | 0.620082 |
Target: 5'- aCCCgGCCgcgCCCggucagugCGCCUaggCUCCACgCUCCCg -3' miRNA: 3'- -GGG-UGGa--GGG--------GUGGA---GGGGUG-GAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 137923 | 0.7 | 0.370988 |
Target: 5'- gUCCACCagCCCCAucauacCCUCCCUGuCC-CCCu -3' miRNA: 3'- -GGGUGGa-GGGGU------GGAGGGGU-GGaGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 141847 | 0.7 | 0.386533 |
Target: 5'- uCCCGCgagUCCCCGgUUCCCCcauagcgcacCCUCCCc -3' miRNA: 3'- -GGGUGg--AGGGGUgGAGGGGu---------GGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 143341 | 0.66 | 0.636519 |
Target: 5'- cCCCGCCg--CCGgCUCCaggggcucggagcgCCGCUUCCCg -3' miRNA: 3'- -GGGUGGaggGGUgGAGG--------------GGUGGAGGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 143699 | 0.66 | 0.610423 |
Target: 5'- gCCAgCUCUCCAaagcgcgcgcCCUCCCUgGCCggaggCCCg -3' miRNA: 3'- gGGUgGAGGGGU----------GGAGGGG-UGGa----GGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 144588 | 0.69 | 0.46154 |
Target: 5'- cUCCACggCCCCGgCUCCgCGCCgUCCg -3' miRNA: 3'- -GGGUGgaGGGGUgGAGGgGUGG-AGGg -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 145180 | 0.66 | 0.610423 |
Target: 5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3' miRNA: 3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 145216 | 0.66 | 0.610423 |
Target: 5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3' miRNA: 3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 145252 | 0.66 | 0.610423 |
Target: 5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3' miRNA: 3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 145288 | 0.66 | 0.610423 |
Target: 5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3' miRNA: 3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5' |
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6295 | 3' | -63 | NC_001844.1 | + | 145324 | 0.66 | 0.610423 |
Target: 5'- gCCCACUaaCCCGCCcacuaaCCCGCCcacuaaCCCg -3' miRNA: 3'- -GGGUGGagGGGUGGag----GGGUGGa-----GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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