miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6295 3' -63 NC_001844.1 + 135855 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135791 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135823 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135887 1.11 0.00054
Target:  5'- cCCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- -GGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135766 1.08 0.000988
Target:  5'- nCCACCUCCCCACCUCCCCACCUCCCc -3'
miRNA:   3'- gGGUGGAGGGGUGGAGGGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 115073 0.78 0.117111
Target:  5'- uCCCGCaUCCCCGCCUUguggCCCACUguUCCCg -3'
miRNA:   3'- -GGGUGgAGGGGUGGAG----GGGUGG--AGGG- -5'
6295 3' -63 NC_001844.1 + 112616 0.74 0.239708
Target:  5'- gUCCugCUCCUCcCCUUCCUgcuCCUCCCc -3'
miRNA:   3'- -GGGugGAGGGGuGGAGGGGu--GGAGGG- -5'
6295 3' -63 NC_001844.1 + 121542 0.72 0.31318
Target:  5'- aCCGCCUCCgCAgUCUCCCCcgguucucacACC-CCCg -3'
miRNA:   3'- gGGUGGAGGgGU-GGAGGGG----------UGGaGGG- -5'
6295 3' -63 NC_001844.1 + 114914 0.71 0.326968
Target:  5'- gCUCG-CUCCCCACCgg-CUGCCUCCCa -3'
miRNA:   3'- -GGGUgGAGGGGUGGaggGGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 137923 0.7 0.370988
Target:  5'- gUCCACCagCCCCAucauacCCUCCCUGuCC-CCCu -3'
miRNA:   3'- -GGGUGGa-GGGGU------GGAGGGGU-GGaGGG- -5'
6295 3' -63 NC_001844.1 + 135084 0.7 0.378707
Target:  5'- gCUACCUCCUCAgCggcagCCaCCGCCUCUg -3'
miRNA:   3'- gGGUGGAGGGGUgGa----GG-GGUGGAGGg -5'
6295 3' -63 NC_001844.1 + 141847 0.7 0.386533
Target:  5'- uCCCGCgagUCCCCGgUUCCCCcauagcgcacCCUCCCc -3'
miRNA:   3'- -GGGUGg--AGGGGUgGAGGGGu---------GGAGGG- -5'
6295 3' -63 NC_001844.1 + 132515 0.7 0.394465
Target:  5'- cCCUAgUUgCaCCACCUCCCCuaagACCgUCCCa -3'
miRNA:   3'- -GGGUgGAgG-GGUGGAGGGG----UGG-AGGG- -5'
6295 3' -63 NC_001844.1 + 118524 0.7 0.402501
Target:  5'- gCCCACCg-CCCAUUg-CCC-CCUCCCu -3'
miRNA:   3'- -GGGUGGagGGGUGGagGGGuGGAGGG- -5'
6295 3' -63 NC_001844.1 + 122478 0.69 0.435661
Target:  5'- aUCGCCUCUaCCGCCacgauUUCCCACCcugcugUCCCg -3'
miRNA:   3'- gGGUGGAGG-GGUGG-----AGGGGUGG------AGGG- -5'
6295 3' -63 NC_001844.1 + 250 0.69 0.435661
Target:  5'- cUCCAUUgaaaUCCCAUC-CCCCACCgCCCa -3'
miRNA:   3'- -GGGUGGa---GGGGUGGaGGGGUGGaGGG- -5'
6295 3' -63 NC_001844.1 + 113879 0.69 0.452822
Target:  5'- gCCACCUCagCCGCgCggUCCUCACUUCCa -3'
miRNA:   3'- gGGUGGAGg-GGUG-G--AGGGGUGGAGGg -5'
6295 3' -63 NC_001844.1 + 144588 0.69 0.46154
Target:  5'- cUCCACggCCCCGgCUCCgCGCCgUCCg -3'
miRNA:   3'- -GGGUGgaGGGGUgGAGGgGUGG-AGGg -5'
6295 3' -63 NC_001844.1 + 35978 0.69 0.470345
Target:  5'- gCCCACCUuuuuuUCCCACaugcgaauaCgCGCCUCCCu -3'
miRNA:   3'- -GGGUGGA-----GGGGUGgag------GgGUGGAGGG- -5'
6295 3' -63 NC_001844.1 + 135996 0.69 0.470345
Target:  5'- uCCCGCUcCCCCugC-CCCCACaggcgggUUCCg -3'
miRNA:   3'- -GGGUGGaGGGGugGaGGGGUGg------AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.