miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6296 5' -58.9 NC_001844.1 + 69721 0.66 0.810309
Target:  5'- gCCGCCGggUGGGCguUCCGCUGgCGCuUCg -3'
miRNA:   3'- gGGUGGU--GCCCG--GGGUGAUgGUGuAG- -5'
6296 5' -58.9 NC_001844.1 + 114435 0.66 0.810309
Target:  5'- gCCCGCUgcaACGGGCCUC-CgGCCAgGg- -3'
miRNA:   3'- -GGGUGG---UGCCCGGGGuGaUGGUgUag -5'
6296 5' -58.9 NC_001844.1 + 126803 0.66 0.810309
Target:  5'- aCCUAUuaacaagguUugGGGCCCCuCUGCCuGCuUCa -3'
miRNA:   3'- -GGGUG---------GugCCCGGGGuGAUGG-UGuAG- -5'
6296 5' -58.9 NC_001844.1 + 144120 0.66 0.801634
Target:  5'- aCCGuCCugGGGCCaguCCuCUagggagACCGCGUCc -3'
miRNA:   3'- gGGU-GGugCCCGG---GGuGA------UGGUGUAG- -5'
6296 5' -58.9 NC_001844.1 + 113687 0.66 0.792812
Target:  5'- aCCGCCAgCGGGUUCUGCcagACUACAc- -3'
miRNA:   3'- gGGUGGU-GCCCGGGGUGa--UGGUGUag -5'
6296 5' -58.9 NC_001844.1 + 113973 0.66 0.78385
Target:  5'- cCCCAggAC-GGUCCCGCcaucagccagUACCACAUCu -3'
miRNA:   3'- -GGGUggUGcCCGGGGUG----------AUGGUGUAG- -5'
6296 5' -58.9 NC_001844.1 + 137192 0.67 0.756213
Target:  5'- -gCGCCGCGGGCgCCCugUcCC-CAa- -3'
miRNA:   3'- ggGUGGUGCCCG-GGGugAuGGuGUag -5'
6296 5' -58.9 NC_001844.1 + 143341 0.67 0.756213
Target:  5'- cCCCGCCGCcGGCUCCagggGCUcggagcGCCGCuUCc -3'
miRNA:   3'- -GGGUGGUGcCCGGGG----UGA------UGGUGuAG- -5'
6296 5' -58.9 NC_001844.1 + 135981 0.67 0.727628
Target:  5'- cCCCACagGCGGGUUCCGCgACgGUAUCg -3'
miRNA:   3'- -GGGUGg-UGCCCGGGGUGaUGgUGUAG- -5'
6296 5' -58.9 NC_001844.1 + 140869 0.67 0.727628
Target:  5'- uCCCGCCGCGGGgCUCGgggGCCGgGg- -3'
miRNA:   3'- -GGGUGGUGCCCgGGGUga-UGGUgUag -5'
6296 5' -58.9 NC_001844.1 + 73623 0.68 0.698331
Target:  5'- gCCGCCGCaGcaGCCCuCGCcGCCGCAUUc -3'
miRNA:   3'- gGGUGGUGcC--CGGG-GUGaUGGUGUAG- -5'
6296 5' -58.9 NC_001844.1 + 2717 0.68 0.677523
Target:  5'- cCCCACCugGGaggucuacaacccGUCCCGCUAagcaaCGCAg- -3'
miRNA:   3'- -GGGUGGugCC-------------CGGGGUGAUg----GUGUag -5'
6296 5' -58.9 NC_001844.1 + 140993 0.68 0.668553
Target:  5'- uCCCugCgACcGGCCCCugUaGCCGCGg- -3'
miRNA:   3'- -GGGugG-UGcCCGGGGugA-UGGUGUag -5'
6296 5' -58.9 NC_001844.1 + 32923 0.68 0.668553
Target:  5'- -aCAUCGCGGGCUCCA-UGCUgguaACAUCu -3'
miRNA:   3'- ggGUGGUGCCCGGGGUgAUGG----UGUAG- -5'
6296 5' -58.9 NC_001844.1 + 115990 0.69 0.638519
Target:  5'- uUCAUCACGGGgagcguugcuaaCCCC-CUGCCccACAUCg -3'
miRNA:   3'- gGGUGGUGCCC------------GGGGuGAUGG--UGUAG- -5'
6296 5' -58.9 NC_001844.1 + 142839 0.69 0.628487
Target:  5'- gCCCggGCC-CGGGCUCC-CU-CCGCGUUg -3'
miRNA:   3'- -GGG--UGGuGCCCGGGGuGAuGGUGUAG- -5'
6296 5' -58.9 NC_001844.1 + 108991 0.69 0.60844
Target:  5'- aCCACCAUGGGCgggUAUUACCACuuUCa -3'
miRNA:   3'- gGGUGGUGCCCGgg-GUGAUGGUGu-AG- -5'
6296 5' -58.9 NC_001844.1 + 115640 0.69 0.598438
Target:  5'- gCgGCCGCGGGUCCUGgUACCAgAa- -3'
miRNA:   3'- gGgUGGUGCCCGGGGUgAUGGUgUag -5'
6296 5' -58.9 NC_001844.1 + 115355 0.7 0.539151
Target:  5'- aUCCACCGCcuGGGCCCCGacgaGCUGCGccUCg -3'
miRNA:   3'- -GGGUGGUG--CCCGGGGUga--UGGUGU--AG- -5'
6296 5' -58.9 NC_001844.1 + 46844 0.71 0.523654
Target:  5'- uCCCGCCGCGGuuuaugcaGCCCauuucugaagauuaACUACCACcUCc -3'
miRNA:   3'- -GGGUGGUGCC--------CGGGg-------------UGAUGGUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.