Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6297 | 3' | -53 | NC_001844.1 | + | 97522 | 0.66 | 0.964882 |
Target: 5'- gUGCCACuGCUugUACaaaGCCAUAGCUg -3' miRNA: 3'- gAUGGUGuCGAcgAUGa--UGGUGUCGA- -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 98017 | 0.66 | 0.96454 |
Target: 5'- -gACCGCgAGCU-CUuuuuauaACUACCugGGCUa -3' miRNA: 3'- gaUGGUG-UCGAcGA-------UGAUGGugUCGA- -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 126005 | 0.66 | 0.961357 |
Target: 5'- gCUcCCACAGCcaacauaacUGCaGCuUAUCACAGCUu -3' miRNA: 3'- -GAuGGUGUCG---------ACGaUG-AUGGUGUCGA- -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 28502 | 0.66 | 0.961357 |
Target: 5'- uCUGCaC-CAGCUGCaGCUugUAgGGCa -3' miRNA: 3'- -GAUG-GuGUCGACGaUGAugGUgUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 66748 | 0.66 | 0.957595 |
Target: 5'- -cACCagagaaACAGUUGCggcggcGCUACCACcAGCa -3' miRNA: 3'- gaUGG------UGUCGACGa-----UGAUGGUG-UCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 29405 | 0.66 | 0.949336 |
Target: 5'- -gGCCGC-GCUGCcgcaACUGCCACAa-- -3' miRNA: 3'- gaUGGUGuCGACGa---UGAUGGUGUcga -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 40634 | 0.67 | 0.924246 |
Target: 5'- -cGCCGCAGCuUGCgugGCUGCauCACGuGCg -3' miRNA: 3'- gaUGGUGUCG-ACGa--UGAUG--GUGU-CGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 124356 | 0.68 | 0.899529 |
Target: 5'- -aACUAgGGggGCUACUGCUAUAGCc -3' miRNA: 3'- gaUGGUgUCgaCGAUGAUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 3936 | 0.68 | 0.892714 |
Target: 5'- -gACCAUGGCgGgUGCUACaGCAGCg -3' miRNA: 3'- gaUGGUGUCGaCgAUGAUGgUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 39742 | 0.69 | 0.881296 |
Target: 5'- uUGCCGCAGCUGUcugcuuuuguagaucUugaugugcgcggGCUACCugGGCc -3' miRNA: 3'- gAUGGUGUCGACG---------------A------------UGAUGGugUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 49036 | 0.7 | 0.83837 |
Target: 5'- -aACCACcGUgGCUACUGCaCACGGUg -3' miRNA: 3'- gaUGGUGuCGaCGAUGAUG-GUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73639 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73692 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73728 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73799 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73835 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 73871 | 0.72 | 0.703207 |
Target: 5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3' miRNA: 3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5' |
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6297 | 3' | -53 | NC_001844.1 | + | 37701 | 0.74 | 0.618403 |
Target: 5'- uUACCACGGCggauuggucUGgUACUGCCGCuAGCa -3' miRNA: 3'- gAUGGUGUCG---------ACgAUGAUGGUG-UCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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