miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6297 5' -53.3 NC_001844.1 + 12919 0.66 0.95178
Target:  5'- uGCugauGCUGCgucGCUugCauguGCGGCgGCUACg -3'
miRNA:   3'- -UGu---CGACGa--UGAugG----UGUCGaCGAUG- -5'
6297 5' -53.3 NC_001844.1 + 73888 0.66 0.937834
Target:  5'- aAUAGCUGCauuUACgccGCCGCAGCaGCc-- -3'
miRNA:   3'- -UGUCGACG---AUGa--UGGUGUCGaCGaug -5'
6297 5' -53.3 NC_001844.1 + 142206 0.66 0.932665
Target:  5'- aGCGGCgGCUcaugGCCACcgaGGCUGCcGCg -3'
miRNA:   3'- -UGUCGaCGAuga-UGGUG---UCGACGaUG- -5'
6297 5' -53.3 NC_001844.1 + 68537 0.67 0.915585
Target:  5'- aGCGGCaGCcGCUGCCAUAGacacGCUAg -3'
miRNA:   3'- -UGUCGaCGaUGAUGGUGUCga--CGAUg -5'
6297 5' -53.3 NC_001844.1 + 40649 0.67 0.909368
Target:  5'- -gGGCUcGCUucuaGCcGCCGCAGCUugcgugGCUGCa -3'
miRNA:   3'- ugUCGA-CGA----UGaUGGUGUCGA------CGAUG- -5'
6297 5' -53.3 NC_001844.1 + 45492 0.67 0.909368
Target:  5'- gGCGGCUGaUGCUugCGCAcgggacugGUUGCUGa -3'
miRNA:   3'- -UGUCGACgAUGAugGUGU--------CGACGAUg -5'
6297 5' -53.3 NC_001844.1 + 49042 0.67 0.902891
Target:  5'- uGCGGUaaccaccgugGCUACUGCaCACGGUgaaGCUGCc -3'
miRNA:   3'- -UGUCGa---------CGAUGAUG-GUGUCGa--CGAUG- -5'
6297 5' -53.3 NC_001844.1 + 65049 0.67 0.902891
Target:  5'- -aGGCUGUUACUucaGCAGCUGUuuUGCc -3'
miRNA:   3'- ugUCGACGAUGAuggUGUCGACG--AUG- -5'
6297 5' -53.3 NC_001844.1 + 114455 0.67 0.896158
Target:  5'- -aGGCccugGCUACcAUCGCAGCccGCUGCa -3'
miRNA:   3'- ugUCGa---CGAUGaUGGUGUCGa-CGAUG- -5'
6297 5' -53.3 NC_001844.1 + 41524 0.68 0.889172
Target:  5'- aACGGCUuccagguggggGCgGCUACCgGCAGCgGCUAUu -3'
miRNA:   3'- -UGUCGA-----------CGaUGAUGG-UGUCGaCGAUG- -5'
6297 5' -53.3 NC_001844.1 + 66739 0.68 0.889172
Target:  5'- aACAGUUGCggcggcGCUACCAcCAGCaucuagGUUACc -3'
miRNA:   3'- -UGUCGACGa-----UGAUGGU-GUCGa-----CGAUG- -5'
6297 5' -53.3 NC_001844.1 + 88815 0.69 0.815824
Target:  5'- aACAGCgGCUugUGCCucCAcGC-GCUGCg -3'
miRNA:   3'- -UGUCGaCGAugAUGGu-GU-CGaCGAUG- -5'
6297 5' -53.3 NC_001844.1 + 97519 0.7 0.758339
Target:  5'- cCA-CUGCUugUacaaaGCCAUAGCUGCUAg -3'
miRNA:   3'- uGUcGACGAugA-----UGGUGUCGACGAUg -5'
6297 5' -53.3 NC_001844.1 + 39753 0.7 0.758339
Target:  5'- aACucuCUGCU-UUGCCGCAGCUGuCUGCu -3'
miRNA:   3'- -UGuc-GACGAuGAUGGUGUCGAC-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.