miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6298 3' -53 NC_001844.1 + 97522 0.66 0.964882
Target:  5'- gUGCCACuGCUugUACaaaGCCAUAGCUg -3'
miRNA:   3'- gAUGGUGuCGAcgAUGa--UGGUGUCGA- -5'
6298 3' -53 NC_001844.1 + 98017 0.66 0.96454
Target:  5'- -gACCGCgAGCU-CUuuuuauaACUACCugGGCUa -3'
miRNA:   3'- gaUGGUG-UCGAcGA-------UGAUGGugUCGA- -5'
6298 3' -53 NC_001844.1 + 126005 0.66 0.961357
Target:  5'- gCUcCCACAGCcaacauaacUGCaGCuUAUCACAGCUu -3'
miRNA:   3'- -GAuGGUGUCG---------ACGaUG-AUGGUGUCGA- -5'
6298 3' -53 NC_001844.1 + 28502 0.66 0.961357
Target:  5'- uCUGCaC-CAGCUGCaGCUugUAgGGCa -3'
miRNA:   3'- -GAUG-GuGUCGACGaUGAugGUgUCGa -5'
6298 3' -53 NC_001844.1 + 66748 0.66 0.957595
Target:  5'- -cACCagagaaACAGUUGCggcggcGCUACCACcAGCa -3'
miRNA:   3'- gaUGG------UGUCGACGa-----UGAUGGUG-UCGa -5'
6298 3' -53 NC_001844.1 + 29405 0.66 0.949336
Target:  5'- -gGCCGC-GCUGCcgcaACUGCCACAa-- -3'
miRNA:   3'- gaUGGUGuCGACGa---UGAUGGUGUcga -5'
6298 3' -53 NC_001844.1 + 40634 0.67 0.924246
Target:  5'- -cGCCGCAGCuUGCgugGCUGCauCACGuGCg -3'
miRNA:   3'- gaUGGUGUCG-ACGa--UGAUG--GUGU-CGa -5'
6298 3' -53 NC_001844.1 + 124356 0.68 0.899529
Target:  5'- -aACUAgGGggGCUACUGCUAUAGCc -3'
miRNA:   3'- gaUGGUgUCgaCGAUGAUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 3936 0.68 0.892714
Target:  5'- -gACCAUGGCgGgUGCUACaGCAGCg -3'
miRNA:   3'- gaUGGUGUCGaCgAUGAUGgUGUCGa -5'
6298 3' -53 NC_001844.1 + 39742 0.69 0.881296
Target:  5'- uUGCCGCAGCUGUcugcuuuuguagaucUugaugugcgcggGCUACCugGGCc -3'
miRNA:   3'- gAUGGUGUCGACG---------------A------------UGAUGGugUCGa -5'
6298 3' -53 NC_001844.1 + 49036 0.7 0.83837
Target:  5'- -aACCACcGUgGCUACUGCaCACGGUg -3'
miRNA:   3'- gaUGGUGuCGaCGAUGAUG-GUGUCGa -5'
6298 3' -53 NC_001844.1 + 73639 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 73692 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 73728 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 73799 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 73835 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 73871 0.72 0.703207
Target:  5'- -cGCCGCAGCaGCccucGCcGCCGCAGCa -3'
miRNA:   3'- gaUGGUGUCGaCGa---UGaUGGUGUCGa -5'
6298 3' -53 NC_001844.1 + 37701 0.74 0.618403
Target:  5'- uUACCACGGCggauuggucUGgUACUGCCGCuAGCa -3'
miRNA:   3'- gAUGGUGUCG---------ACgAUGAUGGUG-UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.