miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6299 3' -54.1 NC_001844.1 + 88819 0.75 0.505242
Target:  5'- cACCaACAGCgGCUugUGCCuccACGcGCUGCg -3'
miRNA:   3'- -UGG-UGUCGaCGAugAUGG---UGU-CGACG- -5'
6299 3' -54.1 NC_001844.1 + 73692 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 73639 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 73871 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 73835 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 73799 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 73728 0.73 0.598054
Target:  5'- cGCCGCAGCaGCccucGCcGCCGCAGCaGCc -3'
miRNA:   3'- -UGGUGUCGaCGa---UGaUGGUGUCGaCG- -5'
6299 3' -54.1 NC_001844.1 + 120571 0.72 0.640302
Target:  5'- cCCGCAGCggaagGCU-CUGCUccggcauCAGCUGCa -3'
miRNA:   3'- uGGUGUCGa----CGAuGAUGGu------GUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 49036 0.72 0.640302
Target:  5'- aACCACcGUgGCUACUGCaCACggugaAGCUGCc -3'
miRNA:   3'- -UGGUGuCGaCGAUGAUG-GUG-----UCGACG- -5'
6299 3' -54.1 NC_001844.1 + 97521 0.72 0.650868
Target:  5'- uGCCACuGCUugUACaaaGCCAUAGCUGCu -3'
miRNA:   3'- -UGGUGuCGAcgAUGa--UGGUGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 65636 0.7 0.744103
Target:  5'- aAUCACGGC-GCUugUuggaGCCcUAGCUGCa -3'
miRNA:   3'- -UGGUGUCGaCGAugA----UGGuGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 3936 0.69 0.79271
Target:  5'- gACCAUGGCgGgUGCUACaGCAGCgacUGCa -3'
miRNA:   3'- -UGGUGUCGaCgAUGAUGgUGUCG---ACG- -5'
6299 3' -54.1 NC_001844.1 + 113688 0.69 0.828008
Target:  5'- uACCGCcAGCggGUU-CUGCCagacuacACGGCUGCa -3'
miRNA:   3'- -UGGUG-UCGa-CGAuGAUGG-------UGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 29415 0.68 0.837464
Target:  5'- cGCCGCucugGGCcGC-GCUGCCGCAaCUGCc -3'
miRNA:   3'- -UGGUG----UCGaCGaUGAUGGUGUcGACG- -5'
6299 3' -54.1 NC_001844.1 + 115765 0.68 0.845851
Target:  5'- gUCACGGCUaGCUACccgGCCcaagcACAgGCUGCc -3'
miRNA:   3'- uGGUGUCGA-CGAUGa--UGG-----UGU-CGACG- -5'
6299 3' -54.1 NC_001844.1 + 37700 0.68 0.845851
Target:  5'- uACCACGGCggauuggucUGgUACUGCCGCuAGCa-- -3'
miRNA:   3'- -UGGUGUCG---------ACgAUGAUGGUG-UCGacg -5'
6299 3' -54.1 NC_001844.1 + 137538 0.68 0.845851
Target:  5'- uGCCGgAGCagagccuuccGCUGCggGCCAC-GCUGCg -3'
miRNA:   3'- -UGGUgUCGa---------CGAUGa-UGGUGuCGACG- -5'
6299 3' -54.1 NC_001844.1 + 39758 0.68 0.854031
Target:  5'- uCUACAacucuCUGCU-UUGCCGCAGCUGUc -3'
miRNA:   3'- uGGUGUc----GACGAuGAUGGUGUCGACG- -5'
6299 3' -54.1 NC_001844.1 + 102153 0.67 0.88454
Target:  5'- aACCAuucCAGCgGCgGC-ACCAUAGCUGg -3'
miRNA:   3'- -UGGU---GUCGaCGaUGaUGGUGUCGACg -5'
6299 3' -54.1 NC_001844.1 + 103798 0.67 0.891584
Target:  5'- uCC-CAGCUGUUagcGCUAuCCACAGuCUGg -3'
miRNA:   3'- uGGuGUCGACGA---UGAU-GGUGUC-GACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.