miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
630 3' -55.9 AC_000017.1 + 10535 0.66 0.574633
Target:  5'- cGCGacuUUcCGCGCGCcuccAC-CACCGCCGc -3'
miRNA:   3'- -UGCau-AA-GCGCGCGu---UGcGUGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 25387 0.66 0.55234
Target:  5'- aACGcagUCGCGgacguaguCGCGGCGCGCCucGCCc -3'
miRNA:   3'- -UGCauaAGCGC--------GCGUUGCGUGG--CGGu -5'
630 3' -55.9 AC_000017.1 + 26930 0.66 0.55234
Target:  5'- uACGgGUUCGUuggGCGCcaGACGCAgCGCUc -3'
miRNA:   3'- -UGCaUAAGCG---CGCG--UUGCGUgGCGGu -5'
630 3' -55.9 AC_000017.1 + 16182 0.66 0.530314
Target:  5'- gGCGgaggCGCGUaGCAcguCGcCACCGCCGc -3'
miRNA:   3'- -UGCauaaGCGCG-CGUu--GC-GUGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 18624 0.66 0.519421
Target:  5'- ------cCGCGCGUcccuGCGCcguGCCGCCAg -3'
miRNA:   3'- ugcauaaGCGCGCGu---UGCG---UGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 12338 0.67 0.49791
Target:  5'- gGCGg---UGCGgGCGGCGCugCagaGCCAg -3'
miRNA:   3'- -UGCauaaGCGCgCGUUGCGugG---CGGU- -5'
630 3' -55.9 AC_000017.1 + 17471 0.67 0.487304
Target:  5'- gGCaUAUUCGgGCaGUAGCGCGCUGgCGg -3'
miRNA:   3'- -UGcAUAAGCgCG-CGUUGCGUGGCgGU- -5'
630 3' -55.9 AC_000017.1 + 6472 0.67 0.480992
Target:  5'- cGCGguuggCGCGUGCAccuggugcccgacgaGCGCACCaCCGu -3'
miRNA:   3'- -UGCauaa-GCGCGCGU---------------UGCGUGGcGGU- -5'
630 3' -55.9 AC_000017.1 + 16066 0.67 0.476806
Target:  5'- cGCGgugGUggaggagGCGCGCAacuacacgcccACGcCGCCGCCAg -3'
miRNA:   3'- -UGCa--UAag-----CGCGCGU-----------UGC-GUGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 11301 0.67 0.466421
Target:  5'- aGCGUGacaCGCGCGaGGCGUACgUGCCGc -3'
miRNA:   3'- -UGCAUaa-GCGCGCgUUGCGUG-GCGGU- -5'
630 3' -55.9 AC_000017.1 + 12096 0.68 0.446012
Target:  5'- cGCGg--UCGCugaGCu-CGCGCCGCCGg -3'
miRNA:   3'- -UGCauaAGCGcg-CGuuGCGUGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 12694 0.68 0.446012
Target:  5'- aGCGUGagCGCGCGCAGCaGCAggGCa- -3'
miRNA:   3'- -UGCAUaaGCGCGCGUUG-CGUggCGgu -5'
630 3' -55.9 AC_000017.1 + 17866 0.68 0.42317
Target:  5'- ------cCGcCGCGCAugcgacggugcgacGCGCGCCGCCGc -3'
miRNA:   3'- ugcauaaGC-GCGCGU--------------UGCGUGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 11535 0.68 0.406746
Target:  5'- cACGUGUgCGCGCGCGGgacuaauccCGguCCGCg- -3'
miRNA:   3'- -UGCAUAaGCGCGCGUU---------GCguGGCGgu -5'
630 3' -55.9 AC_000017.1 + 33323 0.69 0.387943
Target:  5'- --uUAUUCGCGCGCugcuGCaGCACCaCCGc -3'
miRNA:   3'- ugcAUAAGCGCGCGu---UG-CGUGGcGGU- -5'
630 3' -55.9 AC_000017.1 + 12558 0.69 0.360832
Target:  5'- uGCGUgggGUUUGCGCGCGcCGggacCACCGCUu -3'
miRNA:   3'- -UGCA---UAAGCGCGCGUuGC----GUGGCGGu -5'
630 3' -55.9 AC_000017.1 + 11480 0.7 0.343506
Target:  5'- -aGUcccgCGCGCGCAcACGUggcgGCCGCCGa -3'
miRNA:   3'- ugCAuaa-GCGCGCGU-UGCG----UGGCGGU- -5'
630 3' -55.9 AC_000017.1 + 21645 0.7 0.343506
Target:  5'- gACGUGgucCGUGUGCAccagcCGCACCGCg- -3'
miRNA:   3'- -UGCAUaa-GCGCGCGUu----GCGUGGCGgu -5'
630 3' -55.9 AC_000017.1 + 16433 0.7 0.318656
Target:  5'- aGCGgccugCGCGUGCccguGCGCACCcGCCc -3'
miRNA:   3'- -UGCauaa-GCGCGCGu---UGCGUGG-CGGu -5'
630 3' -55.9 AC_000017.1 + 12750 0.72 0.24569
Target:  5'- uGCugcugCGCGCGCucACGCugCGCCAc -3'
miRNA:   3'- -UGcauaaGCGCGCGu-UGCGugGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.