miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6300 3' -53.6 NC_001844.1 + 137563 0.76 0.510723
Target:  5'- uGUUGGCagGCCcuuuuGCAGCUGAUGCCGgAGCa -3'
miRNA:   3'- -CGACUG--UGG-----UGUCGACUGUGGUgUCG- -5'
6300 3' -53.6 NC_001844.1 + 120587 0.73 0.634314
Target:  5'- -aUGGCA-CGCAGCgUGGC-CCGCAGCg -3'
miRNA:   3'- cgACUGUgGUGUCG-ACUGuGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 89342 0.72 0.685444
Target:  5'- uGCUG-CACCACAucuaaccGCUGACGCUcuaaugcggggGCAGUu -3'
miRNA:   3'- -CGACuGUGGUGU-------CGACUGUGG-----------UGUCG- -5'
6300 3' -53.6 NC_001844.1 + 125982 0.72 0.727416
Target:  5'- aGCU--UAUCACAGCuuuacagguggUGGCACUACAGCa -3'
miRNA:   3'- -CGAcuGUGGUGUCG-----------ACUGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73885 0.7 0.804524
Target:  5'- aGCUGcauuuacgcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- -CGACu--------GUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 39108 0.7 0.831003
Target:  5'- gGUUGACACCACuuGCUuuggGGCAUCAU-GCa -3'
miRNA:   3'- -CGACUGUGGUGu-CGA----CUGUGGUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 121623 0.69 0.839462
Target:  5'- cGCUGACGCgaauucgcccaCugAGCggggaagcGACACCGCGuGCg -3'
miRNA:   3'- -CGACUGUG-----------GugUCGa-------CUGUGGUGU-CG- -5'
6300 3' -53.6 NC_001844.1 + 102144 0.69 0.863624
Target:  5'- aGCggcGGCACCAUAGCUGGagaaACAGUu -3'
miRNA:   3'- -CGa--CUGUGGUGUCGACUguggUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 68435 0.69 0.87125
Target:  5'- gGCcGACGCCcugGCAGCccuggaaGACGCCGC-GCg -3'
miRNA:   3'- -CGaCUGUGG---UGUCGa------CUGUGGUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 22444 0.69 0.87125
Target:  5'- uCUGGgACCAguGCUaGCGCCAgucCAGCc -3'
miRNA:   3'- cGACUgUGGUguCGAcUGUGGU---GUCG- -5'
6300 3' -53.6 NC_001844.1 + 73838 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73802 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73731 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73695 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 73642 0.69 0.878652
Target:  5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3'
miRNA:   3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 114389 0.69 0.878652
Target:  5'- aGCUGGCugC-CAGCgGACcgcuccGCCGCcgGGCu -3'
miRNA:   3'- -CGACUGugGuGUCGaCUG------UGGUG--UCG- -5'
6300 3' -53.6 NC_001844.1 + 118389 0.68 0.899456
Target:  5'- -aUGAUauuuACCAggaAGUgucgUGGCACCACAGCg -3'
miRNA:   3'- cgACUG----UGGUg--UCG----ACUGUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 93878 0.67 0.929251
Target:  5'- --aGACuACaCACAGgaGA-ACCACAGCg -3'
miRNA:   3'- cgaCUG-UG-GUGUCgaCUgUGGUGUCG- -5'
6300 3' -53.6 NC_001844.1 + 79338 0.67 0.929251
Target:  5'- uGUUG-CGCCaAUAGCUGACGaugCACuGCa -3'
miRNA:   3'- -CGACuGUGG-UGUCGACUGUg--GUGuCG- -5'
6300 3' -53.6 NC_001844.1 + 78911 0.67 0.934462
Target:  5'- cGCUGGCAU--CAGCaGAUGCCAUcGCu -3'
miRNA:   3'- -CGACUGUGguGUCGaCUGUGGUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.