Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6300 | 3' | -53.6 | NC_001844.1 | + | 73642 | 0.69 | 0.878652 |
Target: 5'- --cGcCGCCGCAGCagcccucGcCGCCGCAGCa -3' miRNA: 3'- cgaCuGUGGUGUCGa------CuGUGGUGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 68435 | 0.69 | 0.87125 |
Target: 5'- gGCcGACGCCcugGCAGCccuggaaGACGCCGC-GCg -3' miRNA: 3'- -CGaCUGUGG---UGUCGa------CUGUGGUGuCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 22444 | 0.69 | 0.87125 |
Target: 5'- uCUGGgACCAguGCUaGCGCCAgucCAGCc -3' miRNA: 3'- cGACUgUGGUguCGAcUGUGGU---GUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 102144 | 0.69 | 0.863624 |
Target: 5'- aGCggcGGCACCAUAGCUGGagaaACAGUu -3' miRNA: 3'- -CGa--CUGUGGUGUCGACUguggUGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 121623 | 0.69 | 0.839462 |
Target: 5'- cGCUGACGCgaauucgcccaCugAGCggggaagcGACACCGCGuGCg -3' miRNA: 3'- -CGACUGUG-----------GugUCGa-------CUGUGGUGU-CG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 39108 | 0.7 | 0.831003 |
Target: 5'- gGUUGACACCACuuGCUuuggGGCAUCAU-GCa -3' miRNA: 3'- -CGACUGUGGUGu-CGA----CUGUGGUGuCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 73885 | 0.7 | 0.804524 |
Target: 5'- aGCUGcauuuacgcCGCCGCAGCagcccucGcCGCCGCAGCa -3' miRNA: 3'- -CGACu--------GUGGUGUCGa------CuGUGGUGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 125982 | 0.72 | 0.727416 |
Target: 5'- aGCU--UAUCACAGCuuuacagguggUGGCACUACAGCa -3' miRNA: 3'- -CGAcuGUGGUGUCG-----------ACUGUGGUGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 89342 | 0.72 | 0.685444 |
Target: 5'- uGCUG-CACCACAucuaaccGCUGACGCUcuaaugcggggGCAGUu -3' miRNA: 3'- -CGACuGUGGUGU-------CGACUGUGG-----------UGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 120587 | 0.73 | 0.634314 |
Target: 5'- -aUGGCA-CGCAGCgUGGC-CCGCAGCg -3' miRNA: 3'- cgACUGUgGUGUCG-ACUGuGGUGUCG- -5' |
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6300 | 3' | -53.6 | NC_001844.1 | + | 137563 | 0.76 | 0.510723 |
Target: 5'- uGUUGGCagGCCcuuuuGCAGCUGAUGCCGgAGCa -3' miRNA: 3'- -CGACUG--UGG-----UGUCGACUGUGGUgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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