miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6302 5' -62.7 NC_001844.1 + 121820 0.66 0.657641
Target:  5'- cGGCGCGGCGccuaggucuAC-CAGGUaccuccccaccGcGCGGCGUa -3'
miRNA:   3'- -CCGCGCCGC---------UGuGUCCG-----------C-CGCUGCGc -5'
6302 5' -62.7 NC_001844.1 + 139597 0.66 0.656673
Target:  5'- uGGCGCaccugcaaagggaGGgGGCaAUGGGCGGUGG-GCGg -3'
miRNA:   3'- -CCGCG-------------CCgCUG-UGUCCGCCGCUgCGC- -5'
6302 5' -62.7 NC_001844.1 + 8206 0.66 0.647948
Target:  5'- uGCGCGaCGACACuGGCGucugccGCGcCGCu -3'
miRNA:   3'- cCGCGCcGCUGUGuCCGC------CGCuGCGc -5'
6302 5' -62.7 NC_001844.1 + 35255 0.66 0.638244
Target:  5'- gGGUaacaacauCGGCG-CGCAGGuCGGCG-CGCa -3'
miRNA:   3'- -CCGc-------GCCGCuGUGUCC-GCCGCuGCGc -5'
6302 5' -62.7 NC_001844.1 + 120925 0.66 0.61883
Target:  5'- gGGCGCccgccuuuGGgGACA-GGGCGcccGCGGCGCu -3'
miRNA:   3'- -CCGCG--------CCgCUGUgUCCGC---CGCUGCGc -5'
6302 5' -62.7 NC_001844.1 + 140859 0.66 0.609133
Target:  5'- gGGCuCGGgGGC-CGGGgaaGGCGGCGgGa -3'
miRNA:   3'- -CCGcGCCgCUGuGUCCg--CCGCUGCgC- -5'
6302 5' -62.7 NC_001844.1 + 122069 0.67 0.589791
Target:  5'- -aCGCaGGU-ACGCGgcGGCGGCGGCGUGu -3'
miRNA:   3'- ccGCG-CCGcUGUGU--CCGCCGCUGCGC- -5'
6302 5' -62.7 NC_001844.1 + 144184 0.67 0.542021
Target:  5'- cGGCGCaGGCGACccgAgGGGUGaGgGugGCc -3'
miRNA:   3'- -CCGCG-CCGCUG---UgUCCGC-CgCugCGc -5'
6302 5' -62.7 NC_001844.1 + 85537 0.68 0.53261
Target:  5'- -aCGCGGC--CACAGGCGGUGGaGUGu -3'
miRNA:   3'- ccGCGCCGcuGUGUCCGCCGCUgCGC- -5'
6302 5' -62.7 NC_001844.1 + 115809 0.68 0.513971
Target:  5'- cGCGCGaCGACGcCGGGCGGCagGACucccacucgGCGg -3'
miRNA:   3'- cCGCGCcGCUGU-GUCCGCCG--CUG---------CGC- -5'
6302 5' -62.7 NC_001844.1 + 121435 0.68 0.495603
Target:  5'- gGGCGCGGCcggguAC-CAGGgguauuuccuCGGCGGgGCGg -3'
miRNA:   3'- -CCGCGCCGc----UGuGUCC----------GCCGCUgCGC- -5'
6302 5' -62.7 NC_001844.1 + 115669 0.7 0.425429
Target:  5'- uGCGCGGCccucggccacGGCGCAaGaCGGCGGcCGCGg -3'
miRNA:   3'- cCGCGCCG----------CUGUGUcC-GCCGCU-GCGC- -5'
6302 5' -62.7 NC_001844.1 + 79971 0.7 0.408824
Target:  5'- uGGCGCGGauugaGCGGGUGGCGcggguCGCu -3'
miRNA:   3'- -CCGCGCCgcug-UGUCCGCCGCu----GCGc -5'
6302 5' -62.7 NC_001844.1 + 143612 0.71 0.332165
Target:  5'- aGCGCGG-GGCGCAGGCcucGGgGAacaGCGg -3'
miRNA:   3'- cCGCGCCgCUGUGUCCG---CCgCUg--CGC- -5'
6302 5' -62.7 NC_001844.1 + 122618 1.09 0.000755
Target:  5'- aGGCGCGGCGACACAGGCGGCGACGCGu -3'
miRNA:   3'- -CCGCGCCGCUGUGUCCGCCGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.