miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6303 3' -60.7 NC_001844.1 + 120905 0.66 0.746003
Target:  5'- aGgGcGCCCGCGGcgcuuuugagcaGCGCGGgCA-CGUg -3'
miRNA:   3'- gCgCuUGGGCGCC------------UGCGCCgGUaGCG- -5'
6303 3' -60.7 NC_001844.1 + 121649 0.66 0.727271
Target:  5'- aGCGcAUCCGCGGACauaGCGcGCac-CGCu -3'
miRNA:   3'- gCGCuUGGGCGCCUG---CGC-CGguaGCG- -5'
6303 3' -60.7 NC_001844.1 + 136457 0.66 0.708238
Target:  5'- gCGCGcuaugUCCGCGGAUGCcGCUGaCGCg -3'
miRNA:   3'- -GCGCuu---GGGCGCCUGCGcCGGUaGCG- -5'
6303 3' -60.7 NC_001844.1 + 113271 0.66 0.708238
Target:  5'- uCGaCGGACCgGgGGACGUGGagcugGUUGCa -3'
miRNA:   3'- -GC-GCUUGGgCgCCUGCGCCgg---UAGCG- -5'
6303 3' -60.7 NC_001844.1 + 145584 0.67 0.688967
Target:  5'- aCGCGGGCCCucauucaaauaGgGGGCGUGGCUuuUUGg -3'
miRNA:   3'- -GCGCUUGGG-----------CgCCUGCGCCGGu-AGCg -5'
6303 3' -60.7 NC_001844.1 + 78011 0.67 0.679263
Target:  5'- gCGCGAuuuACCCGa-GACGCcaggcGGCCcUCGUc -3'
miRNA:   3'- -GCGCU---UGGGCgcCUGCG-----CCGGuAGCG- -5'
6303 3' -60.7 NC_001844.1 + 32246 0.67 0.679263
Target:  5'- gGCGGcauucaaaucucAUCUGCGGGuguaguaacUGCGGCCAUCa- -3'
miRNA:   3'- gCGCU------------UGGGCGCCU---------GCGCCGGUAGcg -5'
6303 3' -60.7 NC_001844.1 + 131551 0.67 0.669523
Target:  5'- aCGCcccgGAAUCUGCGGGCuGUGGCCGg-GUa -3'
miRNA:   3'- -GCG----CUUGGGCGCCUG-CGCCGGUagCG- -5'
6303 3' -60.7 NC_001844.1 + 113524 0.67 0.669523
Target:  5'- uGCGGACggCGCGGAgcCGgGGCCGUggaGCc -3'
miRNA:   3'- gCGCUUGg-GCGCCU--GCgCCGGUAg--CG- -5'
6303 3' -60.7 NC_001844.1 + 142457 0.67 0.669523
Target:  5'- --aGGACCCGCGGcCGCcgucuugcGCCGUgGCc -3'
miRNA:   3'- gcgCUUGGGCGCCuGCGc-------CGGUAgCG- -5'
6303 3' -60.7 NC_001844.1 + 144286 0.67 0.659756
Target:  5'- gGCGcGCaaaCGCGGcCuCGGCCcUCGCg -3'
miRNA:   3'- gCGCuUGg--GCGCCuGcGCCGGuAGCG- -5'
6303 3' -60.7 NC_001844.1 + 105937 0.67 0.649968
Target:  5'- aCGCGcugcuaCCGCGGACGa--CUAUCGCa -3'
miRNA:   3'- -GCGCuug---GGCGCCUGCgccGGUAGCG- -5'
6303 3' -60.7 NC_001844.1 + 121717 0.67 0.649968
Target:  5'- uCGCaGAACauGCGGuacgcGCGCGGCCAgauuUCGg -3'
miRNA:   3'- -GCG-CUUGggCGCC-----UGCGCCGGU----AGCg -5'
6303 3' -60.7 NC_001844.1 + 127639 0.68 0.63036
Target:  5'- aGUGGGCCCGUGGugGgGGaaCUAcuacuauuaguuUCGCu -3'
miRNA:   3'- gCGCUUGGGCGCCugCgCC--GGU------------AGCG- -5'
6303 3' -60.7 NC_001844.1 + 140940 0.69 0.571777
Target:  5'- gGCGAGCCC-CGGAgCGgGGUUAUgaGCg -3'
miRNA:   3'- gCGCUUGGGcGCCU-GCgCCGGUAg-CG- -5'
6303 3' -60.7 NC_001844.1 + 115324 0.7 0.523969
Target:  5'- uCGCGGuCCgCGCGGuucugguUGUGGCCAgaaccgUCGCa -3'
miRNA:   3'- -GCGCUuGG-GCGCCu------GCGCCGGU------AGCG- -5'
6303 3' -60.7 NC_001844.1 + 142770 0.7 0.496019
Target:  5'- gCGCGGA-CCGCGaGGCGCaGCuCGUCGg -3'
miRNA:   3'- -GCGCUUgGGCGC-CUGCGcCG-GUAGCg -5'
6303 3' -60.7 NC_001844.1 + 142396 0.7 0.486852
Target:  5'- uCGCGGACCCuaGCaGAUGUGGCCGggGg -3'
miRNA:   3'- -GCGCUUGGG--CGcCUGCGCCGGUagCg -5'
6303 3' -60.7 NC_001844.1 + 137189 0.72 0.376106
Target:  5'- cCGCGGgcGCCCuguccccaaagGCGGGCGCccGGCCAaaagCGCu -3'
miRNA:   3'- -GCGCU--UGGG-----------CGCCUGCG--CCGGUa---GCG- -5'
6303 3' -60.7 NC_001844.1 + 121592 0.73 0.360635
Target:  5'- aGCGAcaCCGCGuGCGCGGCCGUgucCGUg -3'
miRNA:   3'- gCGCUugGGCGCcUGCGCCGGUA---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.