Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6304 | 5' | -60.7 | NC_001844.1 | + | 41931 | 0.66 | 0.717702 |
Target: 5'- gGGCUCAGUa-GGGcuccagucugccCUCUugUGGCGCa -3' miRNA: 3'- -UCGAGUCGcaCCCa-----------GAGGugGCCGCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 41522 | 0.66 | 0.690424 |
Target: 5'- cGGCUucCAG-GUGGGggcggCUACCGGCaGCg -3' miRNA: 3'- -UCGA--GUCgCACCCaga--GGUGGCCG-CG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 136428 | 0.66 | 0.690424 |
Target: 5'- cGCUCaggagaggAGCG-GGGcCUCCccccgaaaucugGCCGcGCGCg -3' miRNA: 3'- uCGAG--------UCGCaCCCaGAGG------------UGGC-CGCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 117667 | 0.66 | 0.690424 |
Target: 5'- gAGCUUAGgGUgcugcuuuuGGGUUUCUAgUGGgGCg -3' miRNA: 3'- -UCGAGUCgCA---------CCCAGAGGUgGCCgCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 144600 | 0.67 | 0.640935 |
Target: 5'- gAGCUCGGC--GGG-CUCCAcggccCCGGCuccGCg -3' miRNA: 3'- -UCGAGUCGcaCCCaGAGGU-----GGCCG---CG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 48732 | 0.69 | 0.532658 |
Target: 5'- uGGCUaaaAGCGUGGcGUCaaaUCCaguguACgGGCGCu -3' miRNA: 3'- -UCGAg--UCGCACC-CAG---AGG-----UGgCCGCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 69719 | 0.72 | 0.335277 |
Target: 5'- cGC-CGG-GUGGGcgUUCCGCUGGCGCu -3' miRNA: 3'- uCGaGUCgCACCCa-GAGGUGGCCGCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 144663 | 0.73 | 0.306853 |
Target: 5'- cAGcCUCGGCGUcGGG-CUCCAgCaGCGCg -3' miRNA: 3'- -UC-GAGUCGCA-CCCaGAGGUgGcCGCG- -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 51029 | 0.74 | 0.265891 |
Target: 5'- cGCUCGGCcUGGGcCccaucagauucaauUCCACCGGCGg -3' miRNA: 3'- uCGAGUCGcACCCaG--------------AGGUGGCCGCg -5' |
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6304 | 5' | -60.7 | NC_001844.1 | + | 121841 | 1.11 | 0.00069 |
Target: 5'- gAGCUCAGCGUGGGUCUCCACCGGCGCg -3' miRNA: 3'- -UCGAGUCGCACCCAGAGGUGGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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