miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6306 3' -61 NC_001844.1 + 122218 0.67 0.633483
Target:  5'- aGGUGGGGaggugGGGaGGUGgGGAGGUa--- -3'
miRNA:   3'- cCUACCCCa----CCC-CCGC-CCUCCAcuuu -5'
6306 3' -61 NC_001844.1 + 85202 0.7 0.44207
Target:  5'- -aGUGGGGUGaGGGGgGuugaguuuucGGGGGUGAGc -3'
miRNA:   3'- ccUACCCCAC-CCCCgC----------CCUCCACUUu -5'
6306 3' -61 NC_001844.1 + 138300 0.71 0.382842
Target:  5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3'
miRNA:   3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5'
6306 3' -61 NC_001844.1 + 138264 0.71 0.382842
Target:  5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3'
miRNA:   3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5'
6306 3' -61 NC_001844.1 + 138228 0.71 0.382842
Target:  5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3'
miRNA:   3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5'
6306 3' -61 NC_001844.1 + 138192 0.71 0.382842
Target:  5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3'
miRNA:   3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5'
6306 3' -61 NC_001844.1 + 138156 0.71 0.382842
Target:  5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3'
miRNA:   3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5'
6306 3' -61 NC_001844.1 + 12641 0.71 0.359124
Target:  5'- uGGGUGGGGUGugguuuuuguGGGGCucaaacggccauGGGAGGUaGAu- -3'
miRNA:   3'- -CCUACCCCAC----------CCCCG------------CCCUCCA-CUuu -5'
6306 3' -61 NC_001844.1 + 122250 0.75 0.227915
Target:  5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3'
miRNA:   3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5'
6306 3' -61 NC_001844.1 + 122282 0.75 0.227915
Target:  5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3'
miRNA:   3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5'
6306 3' -61 NC_001844.1 + 122314 0.75 0.227915
Target:  5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3'
miRNA:   3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5'
6306 3' -61 NC_001844.1 + 122346 0.75 0.227915
Target:  5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3'
miRNA:   3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5'
6306 3' -61 NC_001844.1 + 118967 1.07 0.001171
Target:  5'- uGGAUGGGGUGGGGGCGGGAGGUGAAAa -3'
miRNA:   3'- -CCUACCCCACCCCCGCCCUCCACUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.