Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6306 | 3' | -61 | NC_001844.1 | + | 118967 | 1.07 | 0.001171 |
Target: 5'- uGGAUGGGGUGGGGGCGGGAGGUGAAAa -3' miRNA: 3'- -CCUACCCCACCCCCGCCCUCCACUUU- -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 122346 | 0.75 | 0.227915 |
Target: 5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3' miRNA: 3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 122314 | 0.75 | 0.227915 |
Target: 5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3' miRNA: 3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 122282 | 0.75 | 0.227915 |
Target: 5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3' miRNA: 3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 122250 | 0.75 | 0.227915 |
Target: 5'- aGGUGGGGaggugGGGaGGUgGGGAGGUGggGa -3' miRNA: 3'- cCUACCCCa----CCC-CCG-CCCUCCACuuU- -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 12641 | 0.71 | 0.359124 |
Target: 5'- uGGGUGGGGUGugguuuuuguGGGGCucaaacggccauGGGAGGUaGAu- -3' miRNA: 3'- -CCUACCCCAC----------CCCCG------------CCCUCCA-CUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 138300 | 0.71 | 0.382842 |
Target: 5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3' miRNA: 3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 138264 | 0.71 | 0.382842 |
Target: 5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3' miRNA: 3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 138228 | 0.71 | 0.382842 |
Target: 5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3' miRNA: 3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 138192 | 0.71 | 0.382842 |
Target: 5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3' miRNA: 3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 138156 | 0.71 | 0.382842 |
Target: 5'- gGGGUGGucGUGGGGGUGgucguGGGGGUGGu- -3' miRNA: 3'- -CCUACCc-CACCCCCGC-----CCUCCACUuu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 85202 | 0.7 | 0.44207 |
Target: 5'- -aGUGGGGUGaGGGGgGuugaguuuucGGGGGUGAGc -3' miRNA: 3'- ccUACCCCAC-CCCCgC----------CCUCCACUUu -5' |
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6306 | 3' | -61 | NC_001844.1 | + | 122218 | 0.67 | 0.633483 |
Target: 5'- aGGUGGGGaggugGGGaGGUGgGGAGGUa--- -3' miRNA: 3'- cCUACCCCa----CCC-CCGC-CCUCCAcuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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