miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6308 3' -59.6 NC_001844.1 + 121790 0.66 0.748476
Target:  5'- ---cCCCAccGCgCGGCgUAgCGGGUCCgCCg -3'
miRNA:   3'- uuuuGGGU--UG-GCCG-GUgGCCCAGG-GG- -5'
6308 3' -59.6 NC_001844.1 + 144877 0.66 0.738968
Target:  5'- ----aUCAACUGcGCUGCCGGGcucaCCCCa -3'
miRNA:   3'- uuuugGGUUGGC-CGGUGGCCCa---GGGG- -5'
6308 3' -59.6 NC_001844.1 + 65288 0.66 0.719693
Target:  5'- uAAACCCGuc---CCACCGGGcguUCCCCa -3'
miRNA:   3'- uUUUGGGUuggccGGUGGCCC---AGGGG- -5'
6308 3' -59.6 NC_001844.1 + 102425 0.67 0.680348
Target:  5'- --uGCCCAGCUGcGCCugCacguGGuuUCCCCg -3'
miRNA:   3'- uuuUGGGUUGGC-CGGugGc---CC--AGGGG- -5'
6308 3' -59.6 NC_001844.1 + 141093 0.67 0.670396
Target:  5'- gGAGGCCgAGgguggaaacUCGGCC-CCGGGagaCCCCg -3'
miRNA:   3'- -UUUUGGgUU---------GGCCGGuGGCCCa--GGGG- -5'
6308 3' -59.6 NC_001844.1 + 56015 0.68 0.630368
Target:  5'- cGAAGCgCGACC-GCCG-CGGG-CCCCa -3'
miRNA:   3'- -UUUUGgGUUGGcCGGUgGCCCaGGGG- -5'
6308 3' -59.6 NC_001844.1 + 115719 0.69 0.560628
Target:  5'- cGGAUCCc-CCGGCCACaucugcuaGGGUCCgCg -3'
miRNA:   3'- uUUUGGGuuGGCCGGUGg-------CCCAGGgG- -5'
6308 3' -59.6 NC_001844.1 + 141797 0.7 0.521682
Target:  5'- ---gUCCGACCcgGGCCA-UGGGUCUCCg -3'
miRNA:   3'- uuuuGGGUUGG--CCGGUgGCCCAGGGG- -5'
6308 3' -59.6 NC_001844.1 + 143849 0.7 0.48383
Target:  5'- ---uCCCGGCgCGaGCCGCCGGGUCg-- -3'
miRNA:   3'- uuuuGGGUUG-GC-CGGUGGCCCAGggg -5'
6308 3' -59.6 NC_001844.1 + 134134 0.71 0.474572
Target:  5'- uGAAACCCGACCGGCCucucgaCGcGUCUgCa -3'
miRNA:   3'- -UUUUGGGUUGGCCGGug----GCcCAGGgG- -5'
6308 3' -59.6 NC_001844.1 + 141611 0.71 0.465403
Target:  5'- aGAGGCCCGGCCaacgcagacuugGGCCGCU-GGUCCUUg -3'
miRNA:   3'- -UUUUGGGUUGG------------CCGGUGGcCCAGGGG- -5'
6308 3' -59.6 NC_001844.1 + 114765 0.71 0.438465
Target:  5'- cGAGCCCcuggAGCCGGCgGCgGGGgagCuCCCg -3'
miRNA:   3'- uUUUGGG----UUGGCCGgUGgCCCa--G-GGG- -5'
6308 3' -59.6 NC_001844.1 + 114259 0.74 0.311438
Target:  5'- --cACCCGAcCCGGCggcucgCGCCGGGagCCCCu -3'
miRNA:   3'- uuuUGGGUU-GGCCG------GUGGCCCa-GGGG- -5'
6308 3' -59.6 NC_001844.1 + 142169 0.78 0.172053
Target:  5'- aAGGGCCCAuagagcauucCCGGCCGCCauGGcGUCCCCg -3'
miRNA:   3'- -UUUUGGGUu---------GGCCGGUGG--CC-CAGGGG- -5'
6308 3' -59.6 NC_001844.1 + 116797 1.09 0.00136
Target:  5'- aAAAACCCAACCGGCCACCGGGUCCCCu -3'
miRNA:   3'- -UUUUGGGUUGGCCGGUGGCCCAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.