Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6308 | 5' | -55.8 | NC_001844.1 | + | 143653 | 0.66 | 0.925782 |
|
Target: 5'- aGCGGGcugcGAUgGUAgccagGGCCUggGGGUCGa -3' miRNA: 3'- -CGCCC----CUAgCAUa----UCGGGgaCCUAGC- -5' |
|||||||
| 6308 | 5' | -55.8 | NC_001844.1 | + | 104391 | 0.68 | 0.844373 |
|
Target: 5'- uGCGGGGAaagcauaUCGccacuuUAUccaaacucAGCCCCUGuGAUCu -3' miRNA: 3'- -CGCCCCU-------AGC------AUA--------UCGGGGAC-CUAGc -5' |
|||||||
| 6308 | 5' | -55.8 | NC_001844.1 | + | 122054 | 0.68 | 0.820349 |
|
Target: 5'- gGCGGcGGcguGUCGgggaaAUAGCUCC-GGAUCGg -3' miRNA: 3'- -CGCC-CC---UAGCa----UAUCGGGGaCCUAGC- -5' |
|||||||
| 6308 | 5' | -55.8 | NC_001844.1 | + | 114782 | 0.69 | 0.784918 |
|
Target: 5'- aGCGGGaagCGgcgcuccgAGCCCCUGGAgccggCGg -3' miRNA: 3'- -CGCCCcuaGCaua-----UCGGGGACCUa----GC- -5' |
|||||||
| 6308 | 5' | -55.8 | NC_001844.1 | + | 116760 | 1.1 | 0.002559 |
|
Target: 5'- aGCGGGGAUCGUAUAGCCCCUGGAUCGu -3' miRNA: 3'- -CGCCCCUAGCAUAUCGGGGACCUAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home