miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6309 5' -60.6 NC_001844.1 + 142737 0.66 0.769192
Target:  5'- aGGCGgUggauagggUCagaguCCCCGAGUAGCCUGGc -3'
miRNA:   3'- -CCGCgA--------GGgu---GGGGCUCAUUGGGCCc -5'
6309 5' -60.6 NC_001844.1 + 116289 0.66 0.745429
Target:  5'- cGGaCGC-CCCACCaCCGGGgagGgugcgcuaugggggaACCgGGGa -3'
miRNA:   3'- -CC-GCGaGGGUGG-GGCUCa--U---------------UGGgCCC- -5'
6309 5' -60.6 NC_001844.1 + 117347 0.66 0.732371
Target:  5'- aGGgGUUCCaUACCCCGGccgcCCCGGa -3'
miRNA:   3'- -CCgCGAGG-GUGGGGCUcauuGGGCCc -5'
6309 5' -60.6 NC_001844.1 + 144367 0.66 0.713451
Target:  5'- uGCGCUCuCCGgCCCGGGUGuccaCCGu- -3'
miRNA:   3'- cCGCGAG-GGUgGGGCUCAUug--GGCcc -5'
6309 5' -60.6 NC_001844.1 + 84597 0.67 0.694278
Target:  5'- cGCGCggaaUCUGCCCCGuaucuGGU-GCCUGGGg -3'
miRNA:   3'- cCGCGa---GGGUGGGGC-----UCAuUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 144206 0.67 0.684616
Target:  5'- uGGCGCUCCCgggGCCagCGAacggcgcagGcGACCCGaGGg -3'
miRNA:   3'- -CCGCGAGGG---UGGg-GCU---------CaUUGGGC-CC- -5'
6309 5' -60.6 NC_001844.1 + 117045 0.67 0.684616
Target:  5'- aGCGacaccgagaCCUGCCCgGGGUcuCCCGGGg -3'
miRNA:   3'- cCGCga-------GGGUGGGgCUCAuuGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 140874 0.67 0.684616
Target:  5'- uGCcUUCCCGCCgCGGG--GCUCGGGg -3'
miRNA:   3'- cCGcGAGGGUGGgGCUCauUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 120346 0.67 0.674915
Target:  5'- -aCGCUCCCGgcCCCCGAG--ACagguaCGGGc -3'
miRNA:   3'- ccGCGAGGGU--GGGGCUCauUGg----GCCC- -5'
6309 5' -60.6 NC_001844.1 + 143304 0.67 0.665182
Target:  5'- -cCGCUCUUGCCCCuGGGgcGCCCguugacGGGa -3'
miRNA:   3'- ccGCGAGGGUGGGG-CUCauUGGG------CCC- -5'
6309 5' -60.6 NC_001844.1 + 143855 0.67 0.655424
Target:  5'- aGGgGCUCCCGgCgCGAGccg-CCGGGu -3'
miRNA:   3'- -CCgCGAGGGUgGgGCUCauugGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 97673 0.67 0.655424
Target:  5'- cGGUGUUaagaCCAgCCuuGAGgguuggaAGCCCGGGa -3'
miRNA:   3'- -CCGCGAg---GGU-GGggCUCa------UUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 113397 0.68 0.616294
Target:  5'- cGGagGCUCCuCGCCgCCGAGcccCUCGGGu -3'
miRNA:   3'- -CCg-CGAGG-GUGG-GGCUCauuGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 116325 0.68 0.596767
Target:  5'- cGCuGCUCacaCCAUCCgGAGacccaUGGCCCGGGu -3'
miRNA:   3'- cCG-CGAG---GGUGGGgCUC-----AUUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 117846 0.7 0.501461
Target:  5'- uGGUGCUCCCuuCUCGgcuuguggaGGUAAgagcuCCCGGGg -3'
miRNA:   3'- -CCGCGAGGGugGGGC---------UCAUU-----GGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 144727 0.71 0.474116
Target:  5'- --gGCUCCCACucaaCCCGAGggGCUCGGcGg -3'
miRNA:   3'- ccgCGAGGGUG----GGGCUCauUGGGCC-C- -5'
6309 5' -60.6 NC_001844.1 + 114200 0.71 0.465168
Target:  5'- cGGCGCUgCUggcgGCCCUGGGgaa-CCGGGu -3'
miRNA:   3'- -CCGCGAgGG----UGGGGCUCauugGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 141822 0.72 0.413434
Target:  5'- aGCGCaCCCuCCCCGguGGUggggcguccGACCCGGGc -3'
miRNA:   3'- cCGCGaGGGuGGGGC--UCA---------UUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 141457 0.73 0.373133
Target:  5'- gGGCGaggggCCCG-CCCGGGUuACUCGGGg -3'
miRNA:   3'- -CCGCga---GGGUgGGGCUCAuUGGGCCC- -5'
6309 5' -60.6 NC_001844.1 + 143170 0.74 0.300874
Target:  5'- aGC-CUUCUGCCCCGAGgggcgAGCCUGGGu -3'
miRNA:   3'- cCGcGAGGGUGGGGCUCa----UUGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.