miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
631 3' -57.8 AC_000017.1 + 18682 0.66 0.487536
Target:  5'- --gCGGCAcggCGCaGGGaCGCGCGgcuagGGCg -3'
miRNA:   3'- gaaGCCGUa--GCG-CCC-GCGCGUa----CUGg -5'
631 3' -57.8 AC_000017.1 + 16504 0.66 0.47724
Target:  5'- --gCGGgGg-GCGGGUGCGCAcgGGCa -3'
miRNA:   3'- gaaGCCgUagCGCCCGCGCGUa-CUGg -5'
631 3' -57.8 AC_000017.1 + 8489 0.66 0.47724
Target:  5'- --gCGGCGUCGauGGCuuGCAagaGGCCg -3'
miRNA:   3'- gaaGCCGUAGCgcCCGcgCGUa--CUGG- -5'
631 3' -57.8 AC_000017.1 + 8661 0.66 0.476216
Target:  5'- -gUCGGCGccgcgCGCGGGCaggagcuggugcuGCGCAcggagguugcUGGCg -3'
miRNA:   3'- gaAGCCGUa----GCGCCCG-------------CGCGU----------ACUGg -5'
631 3' -57.8 AC_000017.1 + 11377 0.66 0.45298
Target:  5'- --gCGGgAUCGaaaguuccaugcaGGGCGCgaguugcgGCAUGGCCu -3'
miRNA:   3'- gaaGCCgUAGCg------------CCCGCG--------CGUACUGG- -5'
631 3' -57.8 AC_000017.1 + 11547 0.67 0.427477
Target:  5'- -gUCGGCGgccgccaCGUGuGcGCGCGCggGACUa -3'
miRNA:   3'- gaAGCCGUa------GCGC-C-CGCGCGuaCUGG- -5'
631 3' -57.8 AC_000017.1 + 31424 0.67 0.427477
Target:  5'- cCUUUGGUgGUCGCGGGCaacagucuuaccGUGCAgucacaGGCCc -3'
miRNA:   3'- -GAAGCCG-UAGCGCCCG------------CGCGUa-----CUGG- -5'
631 3' -57.8 AC_000017.1 + 18985 0.67 0.408448
Target:  5'- -cUCGGUggCGCGGGCGaacuGCAccaGCCc -3'
miRNA:   3'- gaAGCCGuaGCGCCCGCg---CGUac-UGG- -5'
631 3' -57.8 AC_000017.1 + 5486 0.68 0.372022
Target:  5'- --gCGGCAUgGCccuuGGCGCGCAgcuuGCCc -3'
miRNA:   3'- gaaGCCGUAgCGc---CCGCGCGUac--UGG- -5'
631 3' -57.8 AC_000017.1 + 12336 0.68 0.337872
Target:  5'- --cCGGCggUGCGGGCgGCGC-UGcagaGCCa -3'
miRNA:   3'- gaaGCCGuaGCGCCCG-CGCGuAC----UGG- -5'
631 3' -57.8 AC_000017.1 + 18877 0.68 0.337872
Target:  5'- -cUUGGaaa-GCGGGCGCGCGgcGACUc -3'
miRNA:   3'- gaAGCCguagCGCCCGCGCGUa-CUGG- -5'
631 3' -57.8 AC_000017.1 + 17164 0.69 0.321672
Target:  5'- --gUGGCAcCGggacUGGGCGUGCA-GACCg -3'
miRNA:   3'- gaaGCCGUaGC----GCCCGCGCGUaCUGG- -5'
631 3' -57.8 AC_000017.1 + 16148 0.69 0.298474
Target:  5'- aCUggCGGCggCGUGGGCGUGUAguUGcgcGCCu -3'
miRNA:   3'- -GAa-GCCGuaGCGCCCGCGCGU--AC---UGG- -5'
631 3' -57.8 AC_000017.1 + 9513 0.7 0.283742
Target:  5'- --aCGGCGcggccguucUCGCGGGgGCGCAguuggaaGACg -3'
miRNA:   3'- gaaGCCGU---------AGCGCCCgCGCGUa------CUGg -5'
631 3' -57.8 AC_000017.1 + 8534 0.71 0.212874
Target:  5'- --aCGGUAcCGCGcGGCGgGCGgugGGCCg -3'
miRNA:   3'- gaaGCCGUaGCGC-CCGCgCGUa--CUGG- -5'
631 3' -57.8 AC_000017.1 + 6307 0.74 0.14514
Target:  5'- gUUUGGUuuuuGUCGCGaucGGCGCGCuccuUGGCCg -3'
miRNA:   3'- gAAGCCG----UAGCGC---CCGCGCGu---ACUGG- -5'
631 3' -57.8 AC_000017.1 + 27393 0.75 0.112625
Target:  5'- aUUCGGUuUCgGUGGGCGCGUAuuccguUGACCc -3'
miRNA:   3'- gAAGCCGuAG-CGCCCGCGCGU------ACUGG- -5'
631 3' -57.8 AC_000017.1 + 9033 1.12 0.000198
Target:  5'- cCUUCGGCAUCGCGGGCGCGCAUGACCa -3'
miRNA:   3'- -GAAGCCGUAGCGCCCGCGCGUACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.