miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6310 5' -59.6 NC_001844.1 + 136270 0.66 0.723385
Target:  5'- -gCCGcgccGGUGGAGaCCCACGCuGAGCUc -3'
miRNA:   3'- gaGGUc---CCGUCUC-GGGUGUGuCUCGA- -5'
6310 5' -59.6 NC_001844.1 + 42750 0.66 0.713524
Target:  5'- gCUCU-GGGCAGAGCCgGCA---AGCg -3'
miRNA:   3'- -GAGGuCCCGUCUCGGgUGUgucUCGa -5'
6310 5' -59.6 NC_001844.1 + 113234 0.66 0.683568
Target:  5'- -cCCuGGGguGAGCCCG-GCAGcGCa -3'
miRNA:   3'- gaGGuCCCguCUCGGGUgUGUCuCGa -5'
6310 5' -59.6 NC_001844.1 + 59843 0.67 0.677524
Target:  5'- uUUCAGGGCAGcuucugcggcAGCCCGuCGCucaaccgauacacuaAGAGCg -3'
miRNA:   3'- gAGGUCCCGUC----------UCGGGU-GUG---------------UCUCGa -5'
6310 5' -59.6 NC_001844.1 + 143636 0.67 0.673488
Target:  5'- -gCCAGGGCcugGGGGUCgaagguaaGCGCGGGGCg -3'
miRNA:   3'- gaGGUCCCG---UCUCGGg-------UGUGUCUCGa -5'
6310 5' -59.6 NC_001844.1 + 98035 0.67 0.643079
Target:  5'- gCUUUAGGGCGGGGUUUugACcgcGAGCUc -3'
miRNA:   3'- -GAGGUCCCGUCUCGGGugUGu--CUCGA- -5'
6310 5' -59.6 NC_001844.1 + 86874 0.67 0.631898
Target:  5'- uUCCAcccagcuGGGCacAGAGCCa--ACAGAGCUu -3'
miRNA:   3'- gAGGU-------CCCG--UCUCGGgugUGUCUCGA- -5'
6310 5' -59.6 NC_001844.1 + 10158 0.68 0.612593
Target:  5'- -gCCAGGGCGGAcUgUAgGCGGAGCa -3'
miRNA:   3'- gaGGUCCCGUCUcGgGUgUGUCUCGa -5'
6310 5' -59.6 NC_001844.1 + 114414 0.68 0.562163
Target:  5'- -gCCAGGG-AGGGCgCGCGCuuuggAGAGCUg -3'
miRNA:   3'- gaGGUCCCgUCUCGgGUGUG-----UCUCGA- -5'
6310 5' -59.6 NC_001844.1 + 50989 0.69 0.542282
Target:  5'- uCUCCccuuGGGCAGcAGCCgccaGCACAGAuGCc -3'
miRNA:   3'- -GAGGu---CCCGUC-UCGGg---UGUGUCU-CGa -5'
6310 5' -59.6 NC_001844.1 + 141461 0.69 0.532428
Target:  5'- -cCCGGGGCgaGGGGCCCGCcCGG-GUUa -3'
miRNA:   3'- gaGGUCCCG--UCUCGGGUGuGUCuCGA- -5'
6310 5' -59.6 NC_001844.1 + 113509 0.74 0.295787
Target:  5'- -gCCGGGGCcguGGAGCCCGC-C-GAGCUg -3'
miRNA:   3'- gaGGUCCCG---UCUCGGGUGuGuCUCGA- -5'
6310 5' -59.6 NC_001844.1 + 116539 1.07 0.001515
Target:  5'- cCUCCAGGGCAGAGCCCACACAGAGCUc -3'
miRNA:   3'- -GAGGUCCCGUCUCGGGUGUGUCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.