miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6311 5' -59.9 NC_001844.1 + 20251 0.66 0.745799
Target:  5'- aCGCgUuagugUGUGCUACGCCGcccGCCCAc- -3'
miRNA:   3'- -GCGgA-----GCGCGAUGCGGCuu-CGGGUcu -5'
6311 5' -59.9 NC_001844.1 + 120374 0.66 0.707285
Target:  5'- aCGUCUgGgCGCcACGgCGGAGCgCAGAa -3'
miRNA:   3'- -GCGGAgC-GCGaUGCgGCUUCGgGUCU- -5'
6311 5' -59.9 NC_001844.1 + 113455 0.67 0.697483
Target:  5'- uGCagggUCGCGCU--GCUGGAGCCCGa- -3'
miRNA:   3'- gCGg---AGCGCGAugCGGCUUCGGGUcu -5'
6311 5' -59.9 NC_001844.1 + 141627 0.67 0.697483
Target:  5'- gGCa--GCGCuUGCGCUuaGAGGCCCGGc -3'
miRNA:   3'- gCGgagCGCG-AUGCGG--CUUCGGGUCu -5'
6311 5' -59.9 NC_001844.1 + 122401 0.68 0.637865
Target:  5'- aGCCUCuGCGCguuUGuUCGAuGGCCCGGGu -3'
miRNA:   3'- gCGGAG-CGCGau-GC-GGCU-UCGGGUCU- -5'
6311 5' -59.9 NC_001844.1 + 113529 0.68 0.627868
Target:  5'- uCGCCUgcggacgGCGCggaGCCGggGCCguGGa -3'
miRNA:   3'- -GCGGAg------CGCGaugCGGCuuCGGguCU- -5'
6311 5' -59.9 NC_001844.1 + 137787 0.68 0.625869
Target:  5'- cCGCuCUCGCcgaggucGCUGCGCCcguaccugucucgGggGCCgGGAn -3'
miRNA:   3'- -GCG-GAGCG-------CGAUGCGG-------------CuuCGGgUCU- -5'
6311 5' -59.9 NC_001844.1 + 101902 0.7 0.510043
Target:  5'- aCGCCUC-CGUUAUGCUGAAGCUa--- -3'
miRNA:   3'- -GCGGAGcGCGAUGCGGCUUCGGgucu -5'
6311 5' -59.9 NC_001844.1 + 137739 0.7 0.500581
Target:  5'- gCGUUcUGCGCUcCGCCGuggcGCCCAGAc -3'
miRNA:   3'- -GCGGaGCGCGAuGCGGCuu--CGGGUCU- -5'
6311 5' -59.9 NC_001844.1 + 88803 0.7 0.472683
Target:  5'- uGCCUccaCGCGCUGCGC-GAGcGCCCuGGc -3'
miRNA:   3'- gCGGA---GCGCGAUGCGgCUU-CGGGuCU- -5'
6311 5' -59.9 NC_001844.1 + 142763 0.71 0.463558
Target:  5'- cCGCgaggCGCaGCU-CGUCGggGCCCAGGc -3'
miRNA:   3'- -GCGga--GCG-CGAuGCGGCuuCGGGUCU- -5'
6311 5' -59.9 NC_001844.1 + 138039 0.71 0.44559
Target:  5'- aCGCCcCGUGUcuacucgauuUGCGCCaagcGAGCCCAGAc -3'
miRNA:   3'- -GCGGaGCGCG----------AUGCGGc---UUCGGGUCU- -5'
6311 5' -59.9 NC_001844.1 + 116202 1.08 0.001376
Target:  5'- cCGCCUCGCGCUACGCCGAAGCCCAGAc -3'
miRNA:   3'- -GCGGAGCGCGAUGCGGCUUCGGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.