miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6312 3' -54.2 NC_001844.1 + 129726 0.66 0.952634
Target:  5'- uGAGUUaAUAUACGgaCgCCCGgGGGCg -3'
miRNA:   3'- cUUCAAgUAUGUGCgaG-GGGCgCCUG- -5'
6312 3' -54.2 NC_001844.1 + 118314 0.66 0.948419
Target:  5'- -uAGUUgGUGCgACGCUCUaCCGgGGAg -3'
miRNA:   3'- cuUCAAgUAUG-UGCGAGG-GGCgCCUg -5'
6312 3' -54.2 NC_001844.1 + 136460 0.66 0.943963
Target:  5'- ------gGUGCGCGCUaugUCCGCGGAUg -3'
miRNA:   3'- cuucaagUAUGUGCGAg--GGGCGCCUG- -5'
6312 3' -54.2 NC_001844.1 + 142581 0.66 0.934316
Target:  5'- cGGGgaCAgcGgACGCUCCgCCGCGGAg -3'
miRNA:   3'- cUUCaaGUa-UgUGCGAGG-GGCGCCUg -5'
6312 3' -54.2 NC_001844.1 + 18528 0.66 0.933808
Target:  5'- cAAGUUCAUccggaggGCGCGUUUCgCGCGGuCc -3'
miRNA:   3'- cUUCAAGUA-------UGUGCGAGGgGCGCCuG- -5'
6312 3' -54.2 NC_001844.1 + 76170 0.68 0.885865
Target:  5'- aAAGUUUauauaaAUACGCGCUgaCCCGCGuGAUa -3'
miRNA:   3'- cUUCAAG------UAUGUGCGAg-GGGCGC-CUG- -5'
6312 3' -54.2 NC_001844.1 + 142119 0.69 0.855964
Target:  5'- gGggGUUa--GCAaCGCUCCCCGUgaugaaGGACc -3'
miRNA:   3'- -CuuCAAguaUGU-GCGAGGGGCG------CCUG- -5'
6312 3' -54.2 NC_001844.1 + 122508 0.69 0.839728
Target:  5'- ---uUUCAgugACGCGaa-CCCGCGGACg -3'
miRNA:   3'- cuucAAGUa--UGUGCgagGGGCGCCUG- -5'
6312 3' -54.2 NC_001844.1 + 114609 0.7 0.795852
Target:  5'- gGAGGcUUCAgACGCGUUCCCCaUGGAg -3'
miRNA:   3'- -CUUC-AAGUaUGUGCGAGGGGcGCCUg -5'
6312 3' -54.2 NC_001844.1 + 36373 0.75 0.532473
Target:  5'- -----cCAUACACGCUUCCCG-GGACu -3'
miRNA:   3'- cuucaaGUAUGUGCGAGGGGCgCCUG- -5'
6312 3' -54.2 NC_001844.1 + 116025 1.1 0.003103
Target:  5'- aGAAGUUCAUACACGCUCCCCGCGGACa -3'
miRNA:   3'- -CUUCAAGUAUGUGCGAGGGGCGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.