Results 1 - 19 of 19 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 143143 | 0.66 | 0.947628 |
Target: 5'- -gGUCugGguggcccGGGAGCagGUUGUcGGCCCCc -3' miRNA: 3'- agUAGugC-------CCCUCG--CAACGaUUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 13087 | 0.66 | 0.943624 |
Target: 5'- aUCGUaacCGauGGGGGCGaccGCUGcaGCCCCa -3' miRNA: 3'- -AGUA---GUgcCCCUCGCaa-CGAU--UGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 143966 | 0.66 | 0.943624 |
Target: 5'- aCGUCGgGGGGcccAGUccaGUUGCcAGCCCa -3' miRNA: 3'- aGUAGUgCCCC---UCG---CAACGaUUGGGg -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 121403 | 0.66 | 0.938947 |
Target: 5'- gCGggGCGGGGAaucGCaugUGCcaUAGCCCCg -3' miRNA: 3'- aGUagUGCCCCU---CGca-ACG--AUUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 143269 | 0.66 | 0.938947 |
Target: 5'- gUCGUU-CGGGGAgGCGUagggUGCcgguccGCCCCc -3' miRNA: 3'- -AGUAGuGCCCCU-CGCA----ACGau----UGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 114787 | 0.67 | 0.923458 |
Target: 5'- gCAagaGCGGGaAGCGgcGCUccgAGCCCCu -3' miRNA: 3'- aGUag-UGCCCcUCGCaaCGA---UUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 142087 | 0.67 | 0.917808 |
Target: 5'- cCAUgucCGCGGGGAGCG-UGUaugAACUUCu -3' miRNA: 3'- aGUA---GUGCCCCUCGCaACGa--UUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 143738 | 0.67 | 0.917808 |
Target: 5'- uUCAUCcaggcagcccgGCGGcGGAGCGguccGCUGGCagCCa -3' miRNA: 3'- -AGUAG-----------UGCC-CCUCGCaa--CGAUUGg-GG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 136074 | 0.67 | 0.911914 |
Target: 5'- aCAUgGCGGGGGccgaucCGgaGCUAuuuCCCCg -3' miRNA: 3'- aGUAgUGCCCCUc-----GCaaCGAUu--GGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 60452 | 0.67 | 0.911914 |
Target: 5'- cUCGUCACuGGGGGUGUUuaccugaggGUUAcaGCCCa -3' miRNA: 3'- -AGUAGUGcCCCUCGCAA---------CGAU--UGGGg -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 120366 | 0.68 | 0.885948 |
Target: 5'- gCGcCACGGcGGAGCGcagaacGCUcccGGCCCCc -3' miRNA: 3'- aGUaGUGCC-CCUCGCaa----CGA---UUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 114218 | 0.69 | 0.864059 |
Target: 5'- aCAUCAaGGGGgggcucucGGCGcUGCUGgcgGCCCUg -3' miRNA: 3'- aGUAGUgCCCC--------UCGCaACGAU---UGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 122100 | 0.69 | 0.864059 |
Target: 5'- ---gCAgGGGGAGCGggaGCUuucGGCCUCg -3' miRNA: 3'- aguaGUgCCCCUCGCaa-CGA---UUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 41772 | 0.7 | 0.814714 |
Target: 5'- gUCAUaGCGGGGcGCa-UGgUAGCCCCa -3' miRNA: 3'- -AGUAgUGCCCCuCGcaACgAUUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 16548 | 0.7 | 0.814714 |
Target: 5'- --uUCugGGGGaAGCGguuggagaaGCgUAACCCCg -3' miRNA: 3'- aguAGugCCCC-UCGCaa-------CG-AUUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 45132 | 0.7 | 0.778334 |
Target: 5'- aUCGUCcaggaGGGGAGUGUuuucUGgUAcaGCCCCa -3' miRNA: 3'- -AGUAGug---CCCCUCGCA----ACgAU--UGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 137941 | 0.71 | 0.768882 |
Target: 5'- gUCAcaGCGGGGGGCGccGUccaccAGCCCCa -3' miRNA: 3'- -AGUagUGCCCCUCGCaaCGa----UUGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 115527 | 0.75 | 0.545836 |
Target: 5'- ---cCGCGGcGGAGCGUccGCUGuCCCCg -3' miRNA: 3'- aguaGUGCC-CCUCGCAa-CGAUuGGGG- -5' |
|||||||
6312 | 5' | -54.3 | NC_001844.1 | + | 115990 | 1.12 | 0.002774 |
Target: 5'- uUCAUCACGGGGAGCGUUGCUAACCCCc -3' miRNA: 3'- -AGUAGUGCCCCUCGCAACGAUUGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home