miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6313 3' -61.8 NC_001844.1 + 91516 0.66 0.655424
Target:  5'- gGGUCCaUCaGCAgaucugggGUGGCGGCUUCGGa -3'
miRNA:   3'- -CCGGGaAGgCGUg-------CGCCGUCGGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 144306 0.66 0.635864
Target:  5'- gGGCuCCgagUUCggguagagGCGCGCaaacGCGGCCUCGGc -3'
miRNA:   3'- -CCG-GGa--AGG--------CGUGCGc---CGUCGGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 115818 0.67 0.616294
Target:  5'- uGGCCUacCCGCGCgacgacgccggGCGGCAGgacucccaCUCGGc -3'
miRNA:   3'- -CCGGGaaGGCGUG-----------CGCCGUCg-------GAGCC- -5'
6313 3' -61.8 NC_001844.1 + 144527 0.67 0.616294
Target:  5'- aGGCCCcaucggUUgGcCGCGCGGUGGCUcUGGg -3'
miRNA:   3'- -CCGGGa-----AGgC-GUGCGCCGUCGGaGCC- -5'
6313 3' -61.8 NC_001844.1 + 122080 0.67 0.596767
Target:  5'- cGGCCUcggguaCGCagguACGCGGCGGCggCGGc -3'
miRNA:   3'- -CCGGGaag---GCG----UGCGCCGUCGgaGCC- -5'
6313 3' -61.8 NC_001844.1 + 114207 0.68 0.538945
Target:  5'- gGGCUC-UCgGCGCuGCuGGCGGCCcUGGg -3'
miRNA:   3'- -CCGGGaAGgCGUG-CG-CCGUCGGaGCC- -5'
6313 3' -61.8 NC_001844.1 + 134523 0.68 0.538945
Target:  5'- cGGCUCUUCUGC-UGCcGCuGgCUCGGg -3'
miRNA:   3'- -CCGGGAAGGCGuGCGcCGuCgGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 141678 0.68 0.520071
Target:  5'- gGGCCuCUUCgGCcccgguugugGCGGCGGUCUgGGg -3'
miRNA:   3'- -CCGG-GAAGgCGug--------CGCCGUCGGAgCC- -5'
6313 3' -61.8 NC_001844.1 + 113591 0.69 0.510731
Target:  5'- aGCCCagagCCacCGCGCGGCcaaccgauggGGCCUUGGg -3'
miRNA:   3'- cCGGGaa--GGc-GUGCGCCG----------UCGGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 141122 0.69 0.492267
Target:  5'- cGGCCCcUUgGCGC-CGGCcuccCCUCGGg -3'
miRNA:   3'- -CCGGGaAGgCGUGcGCCGuc--GGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 143632 0.71 0.373133
Target:  5'- gGGCCUgggggUCgaagguaaGCGCGgGGCgcaGGCCUCGGg -3'
miRNA:   3'- -CCGGGa----AGg-------CGUGCgCCG---UCGGAGCC- -5'
6313 3' -61.8 NC_001844.1 + 115665 0.71 0.3654
Target:  5'- cGGCCCUcggCCacgGCGCaagaCGGCGGCCgCGGg -3'
miRNA:   3'- -CCGGGAa--GG---CGUGc---GCCGUCGGaGCC- -5'
6313 3' -61.8 NC_001844.1 + 73648 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 73701 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 73737 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 73790 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 73826 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 73862 0.72 0.350267
Target:  5'- aGCCCUcgCCGC-CGCaGCAGcCCUCGc -3'
miRNA:   3'- cCGGGAa-GGCGuGCGcCGUC-GGAGCc -5'
6313 3' -61.8 NC_001844.1 + 115920 1.11 0.000708
Target:  5'- gGGCCCUUCCGCACGCGGCAGCCUCGGu -3'
miRNA:   3'- -CCGGGAAGGCGUGCGCCGUCGGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.