Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6313 | 5' | -54 | NC_001844.1 | + | 141598 | 0.66 | 0.960725 |
Target: 5'- aCGCaGaCUugGGCCGCugGUccuuGGGAGc -3' miRNA: 3'- -GCGgC-GAugCUGGCGugCGuu--UUCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 10677 | 0.66 | 0.953094 |
Target: 5'- gGCCGCUugGACa----GCAAAGGGc -3' miRNA: 3'- gCGGCGAugCUGgcgugCGUUUUCUc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 72071 | 0.66 | 0.948927 |
Target: 5'- aCGuuGCUACGGCCaGCcuCGCAAu---- -3' miRNA: 3'- -GCggCGAUGCUGG-CGu-GCGUUuucuc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 8182 | 0.66 | 0.948927 |
Target: 5'- gCGCCGCUAUGGCCucuucaaACGCAu----- -3' miRNA: 3'- -GCGGCGAUGCUGGcg-----UGCGUuuucuc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 58543 | 0.66 | 0.948927 |
Target: 5'- aGCCagguGCUGCGugCGUGCGCcuAAAGcGg -3' miRNA: 3'- gCGG----CGAUGCugGCGUGCGu-UUUCuC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 117116 | 0.66 | 0.944522 |
Target: 5'- cCGCgGCUACaggGGCCGguCGCAGGGa-- -3' miRNA: 3'- -GCGgCGAUG---CUGGCguGCGUUUUcuc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 72605 | 0.67 | 0.929851 |
Target: 5'- aCGCCGUacacAUGGCCGUACaCAAcAAGAGu -3' miRNA: 3'- -GCGGCGa---UGCUGGCGUGcGUU-UUCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 60596 | 0.67 | 0.929851 |
Target: 5'- gCGCaCGCaGCGcCCcaaGCugGCGAGAGAa -3' miRNA: 3'- -GCG-GCGaUGCuGG---CGugCGUUUUCUc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 3871 | 0.67 | 0.92447 |
Target: 5'- uCGCCGCUGCcucugGACCuaACGU---GGAGu -3' miRNA: 3'- -GCGGCGAUG-----CUGGcgUGCGuuuUCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 140730 | 0.68 | 0.880012 |
Target: 5'- gGCCGCgcUGGCUGCGCGgAu--GAGg -3' miRNA: 3'- gCGGCGauGCUGGCGUGCgUuuuCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 136439 | 0.7 | 0.833078 |
Target: 5'- uGCCGCUGa---CGCGCuCAGGAGAGg -3' miRNA: 3'- gCGGCGAUgcugGCGUGcGUUUUCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 94776 | 0.72 | 0.700654 |
Target: 5'- aCGUgaaCGCUGCGcucACCGCGCGCAGAugcuaGGAa -3' miRNA: 3'- -GCG---GCGAUGC---UGGCGUGCGUUU-----UCUc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 61188 | 0.76 | 0.490639 |
Target: 5'- gCGCCGUugguguuuggauaugUACGAuCUGCGCGCAGAAGGc -3' miRNA: 3'- -GCGGCG---------------AUGCU-GGCGUGCGUUUUCUc -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 136313 | 0.81 | 0.280733 |
Target: 5'- -cCCGCUACG-CCGCGCGguGGGGAGg -3' miRNA: 3'- gcGGCGAUGCuGGCGUGCguUUUCUC- -5' |
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6313 | 5' | -54 | NC_001844.1 | + | 115883 | 1.08 | 0.004778 |
Target: 5'- cCGCCGCUACGACCGCACGCAAAAGAGc -3' miRNA: 3'- -GCGGCGAUGCUGGCGUGCGUUUUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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