Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 107808 | 0.66 | 0.700988 |
|
Target: 5'- -gGC-CCucCUCCGCUGGGCUguuuugCGGGGc -3' miRNA: 3'- caCGaGGuuGGGGCGACCCGA------GCUCU- -5' |
|||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 116369 | 0.66 | 0.69109 |
|
Target: 5'- cUGCUCCucucaGGCCCCa--GGGCUCG-GAa -3' miRNA: 3'- cACGAGG-----UUGGGGcgaCCCGAGCuCU- -5' |
|||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 141128 | 0.68 | 0.561008 |
|
Target: 5'- aUGCUCCGGCCCC-UUGGcGCcggccuccccUCGGGGg -3' miRNA: 3'- cACGAGGUUGGGGcGACC-CG----------AGCUCU- -5' |
|||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 140896 | 0.69 | 0.53744 |
|
Target: 5'- cUGCUCUggccggaGACCgcuuugccuucccgCCGCgGGGCUCGGGGg -3' miRNA: 3'- cACGAGG-------UUGG--------------GGCGaCCCGAGCUCU- -5' |
|||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 117169 | 0.76 | 0.224331 |
|
Target: 5'- -cGCUCaUAACCCCGCUccgGGGCUcgcCGAGAu -3' miRNA: 3'- caCGAG-GUUGGGGCGA---CCCGA---GCUCU- -5' |
|||||||
| 6315 | 3' | -60.1 | NC_001844.1 | + | 115453 | 1.07 | 0.001332 |
|
Target: 5'- uGUGCUCCAACCCCGCUGGGCUCGAGAc -3' miRNA: 3'- -CACGAGGUUGGGGCGACCCGAGCUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home