miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
632	3'	-54.2	AC_000017.1	+	18660	0.66	0.711513
	Target:  5'- gGCuAGGGcggGUUAcaacaacGGCGGACGGCCc- -3' miRNA:   3'- -CGuUCCCa--UAGUa------CCGCCUGCUGGcc -5'
632	3'	-54.2	AC_000017.1	+	15669	0.66	0.70048
	Target:  5'- -aGAGaGGUAaacUGGCGGAUGAgCUGGg -3' miRNA:   3'- cgUUC-CCAUaguACCGCCUGCU-GGCC- -5'
632	3'	-54.2	AC_000017.1	+	13974	0.67	0.63323
	Target:  5'- aCGAcGGGUG----GGCGGGCGcggGCCGGg -3' miRNA:   3'- cGUU-CCCAUaguaCCGCCUGC---UGGCC- -5'
632	3'	-54.2	AC_000017.1	+	33471	0.67	0.599438
	Target:  5'- uGCAAGGcgcuGUAuccaaagcUCAUGGCGGG-GACCa- -3' miRNA:   3'- -CGUUCC----CAU--------AGUACCGCCUgCUGGcc -5'
632	3'	-54.2	AC_000017.1	+	23946	0.67	0.599438
	Target:  5'- cGCGGGGGg--CGgcGGCGacGGCGACgGGg -3' miRNA:   3'- -CGUUCCCauaGUa-CCGC--CUGCUGgCC- -5'
632	3'	-54.2	AC_000017.1	+	3668	0.68	0.54382
	Target:  5'- aCGAGuuGGUGcUCAUGGCGG-CGGCUGc -3' miRNA:   3'- cGUUC--CCAU-AGUACCGCCuGCUGGCc -5'
632	3'	-54.2	AC_000017.1	+	9727	0.71	0.390763
	Target:  5'- cGCAA-GGUAggcugagcacCGUGGCGGGCGGCagCGGg -3' miRNA:   3'- -CGUUcCCAUa---------GUACCGCCUGCUG--GCC- -5'
632	3'	-54.2	AC_000017.1	+	15057	0.71	0.378852
	Target:  5'- gGCGGGGGUGgcgCAggcGGCGGcaacaacaguggcaGCGGCgCGGa -3' miRNA:   3'- -CGUUCCCAUa--GUa--CCGCC--------------UGCUG-GCC- -5'
632	3'	-54.2	AC_000017.1	+	10764	0.84	0.05305
	Target:  5'- cGCGGGcGGUAaccgcauggaUCAcGGCGGACGGCCGGa -3' miRNA:   3'- -CGUUC-CCAU----------AGUaCCGCCUGCUGGCC- -5'
632	3'	-54.2	AC_000017.1	+	10649	1.14	0.000404
	Target:  5'- cGCAAGGGUAUCAUGGCGGACGACCGGg -3' miRNA:   3'- -CGUUCCCAUAGUACCGCCUGCUGGCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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