Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6325 | 5' | -43.1 | NC_001846.1 | + | 9025 | 0.66 | 0.99824 |
Target: 5'- --cUAUUa-CAGCAACCACAACAg-- -3' miRNA: 3'- gaaGUAAgaGUUGUUGGUGUUGUacg -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 5268 | 0.66 | 0.99824 |
Target: 5'- --gCAUcUUUAACAGCCACAAgAucUGCc -3' miRNA: 3'- gaaGUAaGAGUUGUUGGUGUUgU--ACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 6866 | 0.66 | 0.997323 |
Target: 5'- -cUCAUcUCUUAACAACaACAACuuaGCg -3' miRNA: 3'- gaAGUA-AGAGUUGUUGgUGUUGua-CG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 19903 | 0.66 | 0.997269 |
Target: 5'- ------aUUCGACAGCCACAuuaguggggaaugGCGUGUu -3' miRNA: 3'- gaaguaaGAGUUGUUGGUGU-------------UGUACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 27829 | 0.67 | 0.996041 |
Target: 5'- aCUUCuuaaaaCAACAugaGCCACAACcuGUGCa -3' miRNA: 3'- -GAAGuaaga-GUUGU---UGGUGUUG--UACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 150 | 0.67 | 0.994294 |
Target: 5'- uUUCGUUCUCu---GCCAgUGACGUGUc -3' miRNA: 3'- gAAGUAAGAGuuguUGGU-GUUGUACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 26314 | 0.67 | 0.991972 |
Target: 5'- --cCAUaCUCAAcCAACUGCugccuGCAUGCa -3' miRNA: 3'- gaaGUAaGAGUU-GUUGGUGu----UGUACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 5239 | 0.69 | 0.980359 |
Target: 5'- uUUgGUUUUgAugAACCACAAC-UGCu -3' miRNA: 3'- gAAgUAAGAgUugUUGGUGUUGuACG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 2691 | 0.72 | 0.912436 |
Target: 5'- -gUCGUUaUCAACAACCACAGgGUa- -3' miRNA: 3'- gaAGUAAgAGUUGUUGGUGUUgUAcg -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 21783 | 0.74 | 0.833112 |
Target: 5'- --cCAUUUUC-ACAGCCACGACAaGUa -3' miRNA: 3'- gaaGUAAGAGuUGUUGGUGUUGUaCG- -5' |
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6325 | 5' | -43.1 | NC_001846.1 | + | 8097 | 1.16 | 0.003801 |
Target: 5'- gCUUCAUUCUCAACAACCACAACAUGCg -3' miRNA: 3'- -GAAGUAAGAGUUGUUGGUGUUGUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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