Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 633 | 3' | -57.6 | AC_000017.1 | + | 16267 | 0.7 | 0.213348 |
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Target: 5'- gGGCGGCAGugccGGGUcGGcGGCGGUGGCGa -3' miRNA: 3'- gUCGCCGUU----CUCGuUC-UCGUCGCCGU- -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 9407 | 0.71 | 0.185727 |
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Target: 5'- uGGCGGCGguGGGGgAGGGGggacaCGGCGGCGa -3' miRNA: 3'- gUCGCCGU--UCUCgUUCUC-----GUCGCCGU- -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 15073 | 0.72 | 0.170709 |
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Target: 5'- gCGGCGGCAAcaaCAGuGGCAGCGGCGc -3' miRNA: 3'- -GUCGCCGUUcucGUUcUCGUCGCCGU- -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 2201 | 0.73 | 0.12711 |
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Target: 5'- nGGCGGCAGGAGC-AGAGCccauggaacccgagAGcCGGCc -3' miRNA: 3'- gUCGCCGUUCUCGuUCUCG--------------UC-GCCGu -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 9746 | 0.74 | 0.124555 |
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Target: 5'- -cGUGGCGGGcGGCAGcGGGCGGCGGUc -3' miRNA: 3'- guCGCCGUUC-UCGUU-CUCGUCGCCGu -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 17594 | 0.74 | 0.110846 |
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Target: 5'- gGGCuGGCGAcGGCGAcGGCGGCGGCGg -3' miRNA: 3'- gUCG-CCGUUcUCGUUcUCGUCGCCGU- -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 2173 | 0.78 | 0.055896 |
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Target: 5'- gCAGCaGCAGGAGgAAGccaGGCGGCGGCGg -3' miRNA: 3'- -GUCGcCGUUCUCgUUC---UCGUCGCCGU- -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 26755 | 0.8 | 0.045227 |
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Target: 5'- cCGGCGGCAgcGGcAGCAAcAGCAGCGGCc -3' miRNA: 3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5' |
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| 633 | 3' | -57.6 | AC_000017.1 | + | 11086 | 1.08 | 0.000284 |
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Target: 5'- gCAGCGGCAAGAGCAAGAGCAGCGGCAg -3' miRNA: 3'- -GUCGCCGUUCUCGUUCUCGUCGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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