Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
633 | 5' | -59.5 | AC_000017.1 | + | 4354 | 0.66 | 0.402931 |
Target: 5'- aGGCACCacgCCCagcgCUCCUGCUaCGa -3' miRNA: 3'- -CCGUGGga-GGGgaa-GAGGAUGGcGCa -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 9385 | 0.66 | 0.392872 |
Target: 5'- --gGgCCUCCCCUUCUUCUucuucugGCgGCGg -3' miRNA: 3'- ccgUgGGAGGGGAAGAGGA-------UGgCGCa -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 3881 | 0.67 | 0.341784 |
Target: 5'- uGCAgCUUCCCgUUCaUCCgcCCGCGa -3' miRNA: 3'- cCGUgGGAGGGgAAG-AGGauGGCGCa -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 17829 | 0.68 | 0.286904 |
Target: 5'- cGGUAUCCUgCCC--CUCCUuauuccacugaucGCCGCGg -3' miRNA: 3'- -CCGUGGGAgGGGaaGAGGA-------------UGGCGCa -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 26905 | 0.69 | 0.228215 |
Target: 5'- aGCGCuCCUCCuCCUgCUgCUGCCGCc- -3' miRNA: 3'- cCGUG-GGAGG-GGAaGAgGAUGGCGca -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 34698 | 0.7 | 0.205319 |
Target: 5'- aGCACCCUCCaCCUUCagCCUcaaGCaGCGa -3' miRNA: 3'- cCGUGGGAGG-GGAAGa-GGA---UGgCGCa -5' |
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633 | 5' | -59.5 | AC_000017.1 | + | 11121 | 1.08 | 0.000265 |
Target: 5'- gGGCACCCUCCCCUUCUCCUACCGCGUc -3' miRNA: 3'- -CCGUGGGAGGGGAAGAGGAUGGCGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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