Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6333 | 3' | -43.5 | NC_001846.1 | + | 28696 | 0.67 | 0.992411 |
Target: 5'- aCAGAcaCAGUAugGUaugUGGGGCAGAUu -3' miRNA: 3'- -GUCUuaGUCGUugUA---AUUCCGUUUGc -5' |
|||||||
6333 | 3' | -43.5 | NC_001846.1 | + | 14716 | 0.69 | 0.973581 |
Target: 5'- gCAGggUCuGCAGCAUacaaaagcaaguccuUAAGaGaCAAGCGa -3' miRNA: 3'- -GUCuuAGuCGUUGUA---------------AUUC-C-GUUUGC- -5' |
|||||||
6333 | 3' | -43.5 | NC_001846.1 | + | 15198 | 0.69 | 0.972239 |
Target: 5'- uUAGggUCGGCAggACAUUGcguuuGGUAuACGc -3' miRNA: 3'- -GUCuuAGUCGU--UGUAAUu----CCGUuUGC- -5' |
|||||||
6333 | 3' | -43.5 | NC_001846.1 | + | 20878 | 0.71 | 0.92805 |
Target: 5'- cCAGGuuuccaGUCAGCAGCAgccu-GCAAACGa -3' miRNA: 3'- -GUCU------UAGUCGUUGUaauucCGUUUGC- -5' |
|||||||
6333 | 3' | -43.5 | NC_001846.1 | + | 18313 | 1.12 | 0.00564 |
Target: 5'- gCAGAAUCAGCAACAUUAAGGCAAACGg -3' miRNA: 3'- -GUCUUAGUCGUUGUAAUUCCGUUUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home