miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
634 5' -58.5 AC_000017.1 + 17018 0.66 0.444347
Target:  5'- --aGCGCGGCCUaaaGCGCGagUCUGGUg -3'
miRNA:   3'- acgCGCGUUGGGac-UGCGCa-AGGCCG- -5'
634 5' -58.5 AC_000017.1 + 15985 0.66 0.42301
Target:  5'- cGUGCGCGggcacuaccgcgcGCCCUGGgGCGcgCacaaacgCGGCc -3'
miRNA:   3'- aCGCGCGU-------------UGGGACUgCGCaaG-------GCCG- -5'
634 5' -58.5 AC_000017.1 + 10561 0.66 0.415405
Target:  5'- cGCuGCGCAACaUCUGGaacCGCGUccgcgacuuUCCGcGCg -3'
miRNA:   3'- aCG-CGCGUUG-GGACU---GCGCA---------AGGC-CG- -5'
634 5' -58.5 AC_000017.1 + 12471 0.66 0.405086
Target:  5'- uUGCGCGCAGUCagcgacaUGAUGCGgUCCaugaccuGGCg -3'
miRNA:   3'- -ACGCGCGUUGGg------ACUGCGCaAGG-------CCG- -5'
634 5' -58.5 AC_000017.1 + 11527 0.67 0.386744
Target:  5'- cGCGCGCGGgacuaauCCCgguccGCGCG-UCgGGCu -3'
miRNA:   3'- aCGCGCGUU-------GGGac---UGCGCaAGgCCG- -5'
634 5' -58.5 AC_000017.1 + 12008 0.67 0.378671
Target:  5'- --aGCGCAuccacaagGCCgUGA-GCGUgagCCGGCg -3'
miRNA:   3'- acgCGCGU--------UGGgACUgCGCAa--GGCCG- -5'
634 5' -58.5 AC_000017.1 + 24081 0.67 0.377781
Target:  5'- aGCaGCGCGAaaccaccCCCgagcgcgGACGCGgUgCGGCg -3'
miRNA:   3'- aCG-CGCGUU-------GGGa------CUGCGCaAgGCCG- -5'
634 5' -58.5 AC_000017.1 + 17826 0.67 0.369834
Target:  5'- gGUGCGCAcgacgcaugccGCCCgucaGGC-CGUggCCGGCc -3'
miRNA:   3'- aCGCGCGU-----------UGGGa---CUGcGCAa-GGCCG- -5'
634 5' -58.5 AC_000017.1 + 10568 0.67 0.369834
Target:  5'- cGCGCGCAGuCgUUGACGCucuagaCCGuGCa -3'
miRNA:   3'- aCGCGCGUU-GgGACUGCGcaa---GGC-CG- -5'
634 5' -58.5 AC_000017.1 + 6641 0.68 0.345015
Target:  5'- cGCGCGCcuguuGCCCgggaucuuuaccgugGACGCGgaccccCCGGa -3'
miRNA:   3'- aCGCGCGu----UGGGa--------------CUGCGCaa----GGCCg -5'
634 5' -58.5 AC_000017.1 + 28475 0.68 0.344181
Target:  5'- gGUGCgGCGACCggUGACGCacugguacGUUCCcGGCa -3'
miRNA:   3'- aCGCG-CGUUGGg-ACUGCG--------CAAGG-CCG- -5'
634 5' -58.5 AC_000017.1 + 16235 0.68 0.335919
Target:  5'- cGCGCggcgGCGGCCCUGcuuaaccgcgcACGuCGcaCCGGCc -3'
miRNA:   3'- aCGCG----CGUUGGGAC-----------UGC-GCaaGGCCG- -5'
634 5' -58.5 AC_000017.1 + 16417 0.68 0.319833
Target:  5'- gGUGCGCGACucgguuagcggCCUG-CGCGUgcCCGuGCg -3'
miRNA:   3'- aCGCGCGUUG-----------GGACuGCGCAa-GGC-CG- -5'
634 5' -58.5 AC_000017.1 + 4114 0.68 0.312009
Target:  5'- cGCGCGCGguagGCCCggGACcaGCGgUCuCGGUc -3'
miRNA:   3'- aCGCGCGU----UGGGa-CUG--CGCaAG-GCCG- -5'
634 5' -58.5 AC_000017.1 + 27992 0.68 0.312009
Target:  5'- cGCGgGCAAagcaCUUGugGCGg--CGGCa -3'
miRNA:   3'- aCGCgCGUUg---GGACugCGCaagGCCG- -5'
634 5' -58.5 AC_000017.1 + 16058 0.69 0.268122
Target:  5'- uUGUGCGCGcCCCaggGGCGCGguagugcCCGcGCa -3'
miRNA:   3'- -ACGCGCGUuGGGa--CUGCGCaa-----GGC-CG- -5'
634 5' -58.5 AC_000017.1 + 22757 0.7 0.253983
Target:  5'- aGUGCuGCAACCCUGuguaucgcaacucGCGCGcgCagGGCg -3'
miRNA:   3'- aCGCG-CGUUGGGAC-------------UGCGCaaGg-CCG- -5'
634 5' -58.5 AC_000017.1 + 23092 0.7 0.241724
Target:  5'- gGUGCuGCGugCaC-GACGCGgccugUCCGGCg -3'
miRNA:   3'- aCGCG-CGUugG-GaCUGCGCa----AGGCCG- -5'
634 5' -58.5 AC_000017.1 + 8711 0.71 0.21012
Target:  5'- cGCGCGCGGCgCC-GACGUGccccugcccccucucCCGGCg -3'
miRNA:   3'- aCGCGCGUUG-GGaCUGCGCaa-------------GGCCG- -5'
634 5' -58.5 AC_000017.1 + 7251 0.78 0.066876
Target:  5'- aGCGCGUAugCCUG-CGCGgccUUCCGGa -3'
miRNA:   3'- aCGCGCGUugGGACuGCGC---AAGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.