miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 3' -54.8 NC_001847.1 + 135012 1.09 0.002473
Target:  5'- aGAUGGCCGCGCACAUGCUUGGUGAUCu -3'
miRNA:   3'- -CUACCGGCGCGUGUACGAACCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 134519 0.73 0.5295
Target:  5'- --cGGCCGCgGCGCAUGU--GGUGGUa -3'
miRNA:   3'- cuaCCGGCG-CGUGUACGaaCCACUAg -5'
6344 3' -54.8 NC_001847.1 + 133423 0.69 0.76779
Target:  5'- -cUGGCCGCgGCGCG-GCggcGGcUGAUCg -3'
miRNA:   3'- cuACCGGCG-CGUGUaCGaa-CC-ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 131429 0.66 0.892905
Target:  5'- cGUGGCCgGCGCGCGcgauUGCcgcgccuaccugUGGUGcgCg -3'
miRNA:   3'- cUACCGG-CGCGUGU----ACGa-----------ACCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 128832 0.66 0.880139
Target:  5'- cGUGGCCGCGCGCAU-CgaGGccGAccUCg -3'
miRNA:   3'- cUACCGGCGCGUGUAcGaaCCa-CU--AG- -5'
6344 3' -54.8 NC_001847.1 + 128081 0.67 0.865061
Target:  5'- --cGGCuCGC-CGCGUGCcUUGGUGGc- -3'
miRNA:   3'- cuaCCG-GCGcGUGUACG-AACCACUag -5'
6344 3' -54.8 NC_001847.1 + 127246 0.67 0.865061
Target:  5'- --cGGCCGcCGCGCGccccgcgcgGCUaGGUGGUUu -3'
miRNA:   3'- cuaCCGGC-GCGUGUa--------CGAaCCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 126782 0.73 0.509264
Target:  5'- ---uGCCGCGCccuACGUGUUUGGUcGAUCg -3'
miRNA:   3'- cuacCGGCGCG---UGUACGAACCA-CUAG- -5'
6344 3' -54.8 NC_001847.1 + 120653 0.68 0.805627
Target:  5'- -uUGGCCGCGUuuguacACA-GCUUcGGUGAg- -3'
miRNA:   3'- cuACCGGCGCG------UGUaCGAA-CCACUag -5'
6344 3' -54.8 NC_001847.1 + 118991 0.66 0.887327
Target:  5'- --cGGCgGCGUgcgACAUGC-UGGcgcUGAUCg -3'
miRNA:   3'- cuaCCGgCGCG---UGUACGaACC---ACUAG- -5'
6344 3' -54.8 NC_001847.1 + 118651 0.67 0.857184
Target:  5'- --aGGCCGCGCGCGggagGCgcaagagaGGUG-UCc -3'
miRNA:   3'- cuaCCGGCGCGUGUa---CGaa------CCACuAG- -5'
6344 3' -54.8 NC_001847.1 + 116423 0.69 0.76779
Target:  5'- --gGGCCGCGCGCuuggGCUcgagggcGGUGggCg -3'
miRNA:   3'- cuaCCGGCGCGUGua--CGAa------CCACuaG- -5'
6344 3' -54.8 NC_001847.1 + 112143 0.67 0.872715
Target:  5'- cGGUGGCCGaaaaGUACGUGCUca-UGAUUc -3'
miRNA:   3'- -CUACCGGCg---CGUGUACGAaccACUAG- -5'
6344 3' -54.8 NC_001847.1 + 111316 0.67 0.861937
Target:  5'- --gGGCCGUGCGCGcGCUggaccgcgagcaGUGGUCg -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGAac----------CACUAG- -5'
6344 3' -54.8 NC_001847.1 + 110809 0.67 0.872715
Target:  5'- --aGGCCGCGCGCG-GCgUGGcGcgCc -3'
miRNA:   3'- cuaCCGGCGCGUGUaCGaACCaCuaG- -5'
6344 3' -54.8 NC_001847.1 + 110681 0.68 0.796395
Target:  5'- ---uGCCGCGCuGCGUGCgcgagGGUGAg- -3'
miRNA:   3'- cuacCGGCGCG-UGUACGaa---CCACUag -5'
6344 3' -54.8 NC_001847.1 + 109947 0.66 0.907434
Target:  5'- --cGGCCGCGCGCGggGCUcgcUGGc---- -3'
miRNA:   3'- cuaCCGGCGCGUGUa-CGA---ACCacuag -5'
6344 3' -54.8 NC_001847.1 + 105904 0.68 0.796395
Target:  5'- --cGGCCGCGgGgcCAUGCagUGGcgGAUCg -3'
miRNA:   3'- cuaCCGGCGCgU--GUACGa-ACCa-CUAG- -5'
6344 3' -54.8 NC_001847.1 + 102515 0.69 0.777467
Target:  5'- --gGGCagaGCGCGCGccGCgccGGUGAUCg -3'
miRNA:   3'- cuaCCGg--CGCGUGUa-CGaa-CCACUAG- -5'
6344 3' -54.8 NC_001847.1 + 101767 0.68 0.81469
Target:  5'- --cGGCCGCcaggagGCGCAgacUGCUgagGGUGAg- -3'
miRNA:   3'- cuaCCGGCG------CGUGU---ACGAa--CCACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.