Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6344 | 3' | -54.8 | NC_001847.1 | + | 70659 | 0.73 | 0.550024 |
Target: 5'- cGUGGCCGCGCAUcUGCUggGGcUGGa- -3' miRNA: 3'- cUACCGGCGCGUGuACGAa-CC-ACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 72370 | 0.67 | 0.849089 |
Target: 5'- cAUGGCCgaGCGCACcucgGUggUGGUGGUg -3' miRNA: 3'- cUACCGG--CGCGUGua--CGa-ACCACUAg -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 74099 | 0.68 | 0.809273 |
Target: 5'- uGAUGGCCGCGUACc-GCUgccgguucccggccgUGGUGcugCg -3' miRNA: 3'- -CUACCGGCGCGUGuaCGA---------------ACCACua-G- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 74501 | 0.69 | 0.738027 |
Target: 5'- --cGGCCGCGCGCAcccucgUGCUgaacaUGGUcuUCa -3' miRNA: 3'- cuaCCGGCGCGUGU------ACGA-----ACCAcuAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 79251 | 0.81 | 0.195273 |
Target: 5'- aAUGGCCGCGUACGUGCUgcccgcccaggucgUGGUcacGAUCa -3' miRNA: 3'- cUACCGGCGCGUGUACGA--------------ACCA---CUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 82465 | 0.67 | 0.857184 |
Target: 5'- --cGGCCGCGUgcgGCGUGCcgUGG-GAc- -3' miRNA: 3'- cuaCCGGCGCG---UGUACGa-ACCaCUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 82671 | 0.69 | 0.738027 |
Target: 5'- --cGcGCCGCGCuCGUGCU--GUGGUCa -3' miRNA: 3'- cuaC-CGGCGCGuGUACGAacCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 87939 | 0.67 | 0.872715 |
Target: 5'- --cGGCCGCGCAC--GC--GGUGAg- -3' miRNA: 3'- cuaCCGGCGCGUGuaCGaaCCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 95212 | 0.66 | 0.880139 |
Target: 5'- -cUGGCCGCGC---UGCUcuuUGGgggcaUGAUCg -3' miRNA: 3'- cuACCGGCGCGuguACGA---ACC-----ACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 101767 | 0.68 | 0.81469 |
Target: 5'- --cGGCCGCcaggagGCGCAgacUGCUgagGGUGAg- -3' miRNA: 3'- cuaCCGGCG------CGUGU---ACGAa--CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 102515 | 0.69 | 0.777467 |
Target: 5'- --gGGCagaGCGCGCGccGCgccGGUGAUCg -3' miRNA: 3'- cuaCCGg--CGCGUGUa-CGaa-CCACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 105904 | 0.68 | 0.796395 |
Target: 5'- --cGGCCGCGgGgcCAUGCagUGGcgGAUCg -3' miRNA: 3'- cuaCCGGCGCgU--GUACGa-ACCa-CUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 109947 | 0.66 | 0.907434 |
Target: 5'- --cGGCCGCGCGCGggGCUcgcUGGc---- -3' miRNA: 3'- cuaCCGGCGCGUGUa-CGA---ACCacuag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 110681 | 0.68 | 0.796395 |
Target: 5'- ---uGCCGCGCuGCGUGCgcgagGGUGAg- -3' miRNA: 3'- cuacCGGCGCG-UGUACGaa---CCACUag -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 110809 | 0.67 | 0.872715 |
Target: 5'- --aGGCCGCGCGCG-GCgUGGcGcgCc -3' miRNA: 3'- cuaCCGGCGCGUGUaCGaACCaCuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 111316 | 0.67 | 0.861937 |
Target: 5'- --gGGCCGUGCGCGcGCUggaccgcgagcaGUGGUCg -3' miRNA: 3'- cuaCCGGCGCGUGUaCGAac----------CACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 112143 | 0.67 | 0.872715 |
Target: 5'- cGGUGGCCGaaaaGUACGUGCUca-UGAUUc -3' miRNA: 3'- -CUACCGGCg---CGUGUACGAaccACUAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 116423 | 0.69 | 0.76779 |
Target: 5'- --gGGCCGCGCGCuuggGCUcgagggcGGUGggCg -3' miRNA: 3'- cuaCCGGCGCGUGua--CGAa------CCACuaG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 118651 | 0.67 | 0.857184 |
Target: 5'- --aGGCCGCGCGCGggagGCgcaagagaGGUG-UCc -3' miRNA: 3'- cuaCCGGCGCGUGUa---CGaa------CCACuAG- -5' |
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6344 | 3' | -54.8 | NC_001847.1 | + | 118991 | 0.66 | 0.887327 |
Target: 5'- --cGGCgGCGUgcgACAUGC-UGGcgcUGAUCg -3' miRNA: 3'- cuaCCGgCGCG---UGUACGaACC---ACUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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