Results 1 - 20 of 388 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6344 | 5' | -59.5 | NC_001847.1 | + | 88624 | 0.66 | 0.753676 |
Target: 5'- -cGCCGccGCCC--CCCgaGCGCUgCCGCu -3' miRNA: 3'- caCGGU--UGGGauGGGagCGCGA-GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 102489 | 0.66 | 0.744155 |
Target: 5'- -cGCCGGCgCCguccaCCUCGCcCUCCaGCu -3' miRNA: 3'- caCGGUUG-GGaug--GGAGCGcGAGG-CG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 100963 | 0.66 | 0.744155 |
Target: 5'- cGUGCgcGCCCccgGCCCgcaGCGCcucagCCGCc -3' miRNA: 3'- -CACGguUGGGa--UGGGag-CGCGa----GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 2990 | 0.66 | 0.744155 |
Target: 5'- -gGCCGGCgCUggaGCCgCgCGCGCUCCa- -3' miRNA: 3'- caCGGUUGgGA---UGG-GaGCGCGAGGcg -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 78100 | 0.66 | 0.744155 |
Target: 5'- -aGCC-GCCUcgGCCCacagggCGCGCUCCu- -3' miRNA: 3'- caCGGuUGGGa-UGGGa-----GCGCGAGGcg -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 104117 | 0.66 | 0.734539 |
Target: 5'- -gGCCGGCgUUGCCggCGCGCg-CGCg -3' miRNA: 3'- caCGGUUGgGAUGGgaGCGCGagGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 100298 | 0.66 | 0.734539 |
Target: 5'- cUGCCGucGCCCgcugcGCgCUCGC-CUCCaGCg -3' miRNA: 3'- cACGGU--UGGGa----UGgGAGCGcGAGG-CG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 98168 | 0.66 | 0.734539 |
Target: 5'- -cGCgGGCCCgcucgccgGCgCC-CGCGCUggCCGCa -3' miRNA: 3'- caCGgUUGGGa-------UG-GGaGCGCGA--GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 80059 | 0.66 | 0.734539 |
Target: 5'- -cGCCcACCCgcCCCcCGCGg-CCGCc -3' miRNA: 3'- caCGGuUGGGauGGGaGCGCgaGGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 131216 | 0.66 | 0.744155 |
Target: 5'- -cGCCGcCCgCUGCCagcgcugugCGUGCgUCCGCg -3' miRNA: 3'- caCGGUuGG-GAUGGga-------GCGCG-AGGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 38207 | 0.66 | 0.75178 |
Target: 5'- cUGCC-GCCCgcggagGCCCgggcCGCGCgccucuacgcggCCGCc -3' miRNA: 3'- cACGGuUGGGa-----UGGGa---GCGCGa-----------GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 15407 | 0.66 | 0.752728 |
Target: 5'- -gGCCGgguuucgGCUC-GCCCUCgGCGCcUCCGUu -3' miRNA: 3'- caCGGU-------UGGGaUGGGAG-CGCG-AGGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 78869 | 0.66 | 0.753676 |
Target: 5'- -cGCgGugCgcGCCCUCGCGCagcCCGUa -3' miRNA: 3'- caCGgUugGgaUGGGAGCGCGa--GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 129780 | 0.66 | 0.753676 |
Target: 5'- -cGCCGgaGCCUggGCCCggcCGCGC-CgCGCg -3' miRNA: 3'- caCGGU--UGGGa-UGGGa--GCGCGaG-GCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 102315 | 0.66 | 0.753676 |
Target: 5'- -cGgCGGCCaCgcggGCCUcgCGCGCUCgCGCg -3' miRNA: 3'- caCgGUUGG-Ga---UGGGa-GCGCGAG-GCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 95527 | 0.66 | 0.753676 |
Target: 5'- -cGCCAGgCUUGcCCCUgGgGCUggggCCGCg -3' miRNA: 3'- caCGGUUgGGAU-GGGAgCgCGA----GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 48704 | 0.66 | 0.753676 |
Target: 5'- cGUGC--ACgCUGCCCgcgcCGCGCagcgCCGCc -3' miRNA: 3'- -CACGguUGgGAUGGGa---GCGCGa---GGCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 19082 | 0.66 | 0.753676 |
Target: 5'- -cGUCGGCCCcGCUUUCGCucccgcuuucGCUCuCGCu -3' miRNA: 3'- caCGGUUGGGaUGGGAGCG----------CGAG-GCG- -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 109875 | 0.66 | 0.753676 |
Target: 5'- gGUGuUCAACgCCUACCUgacCGCGCUguaCCGg -3' miRNA: 3'- -CAC-GGUUG-GGAUGGGa--GCGCGA---GGCg -5' |
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6344 | 5' | -59.5 | NC_001847.1 | + | 8226 | 0.66 | 0.753676 |
Target: 5'- aGUGCgAGCCCUgggACCCgCGCcaGCUCUc- -3' miRNA: 3'- -CACGgUUGGGA---UGGGaGCG--CGAGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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