miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 135046 1.11 0.000826
Target:  5'- uGUGCCAACCCUACCCUCGCGCUCCGCg -3'
miRNA:   3'- -CACGGUUGGGAUGGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 79052 0.81 0.111802
Target:  5'- uGUGCCAGCCCcgcACCCcgggCGCGCUcagCCGCg -3'
miRNA:   3'- -CACGGUUGGGa--UGGGa---GCGCGA---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 99574 0.79 0.13728
Target:  5'- -gGCCAGCCCggcGCCCUCGuCGCggUCGCg -3'
miRNA:   3'- caCGGUUGGGa--UGGGAGC-GCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 116945 0.78 0.17658
Target:  5'- -cGCCAGCCCgagACCUcgcCGCGCgUCCGCc -3'
miRNA:   3'- caCGGUUGGGa--UGGGa--GCGCG-AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 27024 0.76 0.209771
Target:  5'- cUGCCAggACCCUcGCCgUCGCGCUcgCCGUa -3'
miRNA:   3'- cACGGU--UGGGA-UGGgAGCGCGA--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 73574 0.76 0.209771
Target:  5'- gGUGCUGugUCUGCaCCUCGCGCaCCGUg -3'
miRNA:   3'- -CACGGUugGGAUG-GGAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 126987 0.76 0.209771
Target:  5'- -cGCgAGCCCUucccaacuaGCCCUCGCGCagcaCCGCc -3'
miRNA:   3'- caCGgUUGGGA---------UGGGAGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 129837 0.76 0.209771
Target:  5'- cUGCCAggACCCUcGCCgUCGCGCUcgCCGUa -3'
miRNA:   3'- cACGGU--UGGGA-UGGgAGCGCGA--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 24455 0.76 0.209771
Target:  5'- -cGCC-GCCCUcACCCUCGCGCa-CGCa -3'
miRNA:   3'- caCGGuUGGGA-UGGGAGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 106024 0.76 0.220197
Target:  5'- -cGCCAGCUCgcgcaGCCgCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa----UGG-GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3211 0.76 0.220197
Target:  5'- -cGCCAGCUCgcgcaGCCgCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa----UGG-GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 76320 0.76 0.225031
Target:  5'- aGUGCCGACCCUcgcaccgGCCCagGCGC-CgGCg -3'
miRNA:   3'- -CACGGUUGGGA-------UGGGagCGCGaGgCG- -5'
6344 5' -59.5 NC_001847.1 + 19457 0.76 0.225574
Target:  5'- -aGCCGGCUCUcGCCCcCGCGCagCCGCu -3'
miRNA:   3'- caCGGUUGGGA-UGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 1541 0.75 0.242375
Target:  5'- uGUGCCGcccaaGCCCgcccGCCCgauagCGCGC-CCGCg -3'
miRNA:   3'- -CACGGU-----UGGGa---UGGGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 63193 0.75 0.254146
Target:  5'- -cGCCAugGCCgaGCCCgcgCGCGCucUCCGCg -3'
miRNA:   3'- caCGGU--UGGgaUGGGa--GCGCG--AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 937 0.75 0.260206
Target:  5'- -cGCC-GCCCUcgGCCCgCGCGCgCCGCu -3'
miRNA:   3'- caCGGuUGGGA--UGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 91496 0.75 0.266382
Target:  5'- -gGCC-ACCCgaGCCCUCGCGCgcgucCUGCa -3'
miRNA:   3'- caCGGuUGGGa-UGGGAGCGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 106390 0.75 0.272042
Target:  5'- -cGCCAgcugcagguccggGCCCgcgAgCUUCGCGCUCUGCa -3'
miRNA:   3'- caCGGU-------------UGGGa--UgGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3577 0.75 0.272042
Target:  5'- -cGCCAgcugcagguccggGCCCgcgAgCUUCGCGCUCUGCa -3'
miRNA:   3'- caCGGU-------------UGGGa--UgGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3863 0.74 0.279091
Target:  5'- -aGCgGGCCCUccagcggcggcgGCCCgUCGCGCggcgCCGCg -3'
miRNA:   3'- caCGgUUGGGA------------UGGG-AGCGCGa---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.