miRNA display CGI


Results 1 - 20 of 388 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 129837 0.76 0.209771
Target:  5'- cUGCCAggACCCUcGCCgUCGCGCUcgCCGUa -3'
miRNA:   3'- cACGGU--UGGGA-UGGgAGCGCGA--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 79429 0.73 0.327358
Target:  5'- cGUGCCcGCUCUGucgccCCCUCGCGCcgUuuGCa -3'
miRNA:   3'- -CACGGuUGGGAU-----GGGAGCGCG--AggCG- -5'
6344 5' -59.5 NC_001847.1 + 98117 0.73 0.342238
Target:  5'- aGUGCgAGCCCggcGCCC---CGCUCCGCa -3'
miRNA:   3'- -CACGgUUGGGa--UGGGagcGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 88624 0.66 0.753676
Target:  5'- -cGCCGccGCCC--CCCgaGCGCUgCCGCu -3'
miRNA:   3'- caCGGU--UGGGauGGGagCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 1541 0.75 0.242375
Target:  5'- uGUGCCGcccaaGCCCgcccGCCCgauagCGCGC-CCGCg -3'
miRNA:   3'- -CACGGU-----UGGGa---UGGGa----GCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 63193 0.75 0.254146
Target:  5'- -cGCCAugGCCgaGCCCgcgCGCGCucUCCGCg -3'
miRNA:   3'- caCGGU--UGGgaUGGGa--GCGCG--AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 91496 0.75 0.266382
Target:  5'- -gGCC-ACCCgaGCCCUCGCGCgcgucCUGCa -3'
miRNA:   3'- caCGGuUGGGa-UGGGAGCGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 106390 0.75 0.272042
Target:  5'- -cGCCAgcugcagguccggGCCCgcgAgCUUCGCGCUCUGCa -3'
miRNA:   3'- caCGGU-------------UGGGa--UgGGAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 73825 0.74 0.285624
Target:  5'- -cGCCcGCCCcGCCC-CGCGCacCCGCg -3'
miRNA:   3'- caCGGuUGGGaUGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 29915 0.73 0.327358
Target:  5'- -cGCCcGCCUgUGCCCgCGCGC-CCGCg -3'
miRNA:   3'- caCGGuUGGG-AUGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 112563 0.74 0.299051
Target:  5'- -gGCgGGCCCUGCCCcgggGCGC-CCGCu -3'
miRNA:   3'- caCGgUUGGGAUGGGag--CGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 13281 0.74 0.285624
Target:  5'- gGUGCCGGCCCUGUgCgCGCGCUaCGCg -3'
miRNA:   3'- -CACGGUUGGGAUGgGaGCGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 24455 0.76 0.209771
Target:  5'- -cGCC-GCCCUcACCCUCGCGCa-CGCa -3'
miRNA:   3'- caCGGuUGGGA-UGGGAGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 49110 0.73 0.320099
Target:  5'- -gGCCGGCUUguccUCCUCGCGCUcCCGCc -3'
miRNA:   3'- caCGGUUGGGau--GGGAGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 106024 0.76 0.220197
Target:  5'- -cGCCAGCUCgcgcaGCCgCUCGCGCgCCGCc -3'
miRNA:   3'- caCGGUUGGGa----UGG-GAGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 106676 0.74 0.279091
Target:  5'- -aGCgGGCCCUccagcggcggcgGCCCgUCGCGCggcgCCGCg -3'
miRNA:   3'- caCGgUUGGGA------------UGGG-AGCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 121077 0.73 0.327358
Target:  5'- cGUGCUggUgCUGCUgcugCUUGCGCUCUGCg -3'
miRNA:   3'- -CACGGuuGgGAUGG----GAGCGCGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 66164 0.73 0.334737
Target:  5'- cGUGCUcucGGCCgUGCCCgCGCGggCCGCg -3'
miRNA:   3'- -CACGG---UUGGgAUGGGaGCGCgaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 19457 0.76 0.225574
Target:  5'- -aGCCGGCUCUcGCCCcCGCGCagCCGCu -3'
miRNA:   3'- caCGGUUGGGA-UGGGaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 937 0.75 0.260206
Target:  5'- -cGCC-GCCCUcgGCCCgCGCGCgCCGCu -3'
miRNA:   3'- caCGGuUGGGA--UGGGaGCGCGaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.