miRNA display CGI


Results 21 - 40 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 116718 0.66 0.744155
Target:  5'- aUGCUGGCa-UACCCgcgCGCGCUguucgacagccCCGCg -3'
miRNA:   3'- cACGGUUGggAUGGGa--GCGCGA-----------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 115774 0.66 0.744155
Target:  5'- -aGCCGGCUCgGCCagagcguUCGCggagccgcugcgGCUCCGCg -3'
miRNA:   3'- caCGGUUGGGaUGGg------AGCG------------CGAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 131216 0.66 0.744155
Target:  5'- -cGCCGcCCgCUGCCagcgcugugCGUGCgUCCGCg -3'
miRNA:   3'- caCGGUuGG-GAUGGga-------GCGCG-AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 102489 0.66 0.744155
Target:  5'- -cGCCGGCgCCguccaCCUCGCcCUCCaGCu -3'
miRNA:   3'- caCGGUUG-GGaug--GGAGCGcGAGG-CG- -5'
6344 5' -59.5 NC_001847.1 + 100963 0.66 0.744155
Target:  5'- cGUGCgcGCCCccgGCCCgcaGCGCcucagCCGCc -3'
miRNA:   3'- -CACGguUGGGa--UGGGag-CGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 2990 0.66 0.744155
Target:  5'- -gGCCGGCgCUggaGCCgCgCGCGCUCCa- -3'
miRNA:   3'- caCGGUUGgGA---UGG-GaGCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 62413 0.66 0.744155
Target:  5'- -cGCCGGCgCUguuGCCCgCGUGC-CUGCu -3'
miRNA:   3'- caCGGUUGgGA---UGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 78100 0.66 0.744155
Target:  5'- -aGCC-GCCUcgGCCCacagggCGCGCUCCu- -3'
miRNA:   3'- caCGGuUGGGa-UGGGa-----GCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 81380 0.66 0.743197
Target:  5'- cUGCC-GCCCUcGCcgCCUCGgGCcgccggaUCCGCg -3'
miRNA:   3'- cACGGuUGGGA-UG--GGAGCgCG-------AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 134733 0.66 0.738396
Target:  5'- -cGCCcGCCCcggGCCCUCggucucggucggagcGCGgUCCGg -3'
miRNA:   3'- caCGGuUGGGa--UGGGAG---------------CGCgAGGCg -5'
6344 5' -59.5 NC_001847.1 + 65255 0.66 0.734539
Target:  5'- -cGCC-ACCCggGCCCgCGgcCGgUCCGCa -3'
miRNA:   3'- caCGGuUGGGa-UGGGaGC--GCgAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 73939 0.66 0.734539
Target:  5'- -aGCCGGCgCgUACCUggCGCGCg-CGCa -3'
miRNA:   3'- caCGGUUG-GgAUGGGa-GCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 61965 0.66 0.734539
Target:  5'- -gGCCGACUCcGCCgC-CGCG-UCCGCc -3'
miRNA:   3'- caCGGUUGGGaUGG-GaGCGCgAGGCG- -5'
6344 5' -59.5 NC_001847.1 + 47741 0.66 0.734539
Target:  5'- -gGCgGgGCCCcGCCCgCGCGCaaguacuugUCCGCg -3'
miRNA:   3'- caCGgU-UGGGaUGGGaGCGCG---------AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 3545 0.66 0.734539
Target:  5'- -cGgCAGCCCUGCa--CGCGCcgCUGCa -3'
miRNA:   3'- caCgGUUGGGAUGggaGCGCGa-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 104117 0.66 0.734539
Target:  5'- -gGCCGGCgUUGCCggCGCGCg-CGCg -3'
miRNA:   3'- caCGGUUGgGAUGGgaGCGCGagGCG- -5'
6344 5' -59.5 NC_001847.1 + 10398 0.66 0.734539
Target:  5'- -gGCCGcuuuaugacgGCCCgucCCCcgcgcgguUCGCGCUgCCGCc -3'
miRNA:   3'- caCGGU----------UGGGau-GGG--------AGCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 78824 0.66 0.734539
Target:  5'- -cGCCuuuacGGCCUUcgcgGCCCgcCGCGCgacgCCGCa -3'
miRNA:   3'- caCGG-----UUGGGA----UGGGa-GCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 4930 0.66 0.734539
Target:  5'- -cGCCGcgcuuCCCgcGCCCUC-CGCgCCGCc -3'
miRNA:   3'- caCGGUu----GGGa-UGGGAGcGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 30005 0.66 0.734539
Target:  5'- -aGCC-GCCgCUGCCCgcccgCGUGCUggggcccaugCCGCc -3'
miRNA:   3'- caCGGuUGG-GAUGGGa----GCGCGA----------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.