miRNA display CGI


Results 81 - 100 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 70564 0.67 0.821243
Target:  5'- -cGCGCUCaAUGccCCGCGGCC-CGAg -3'
miRNA:   3'- ucUGCGAG-UACaaGGUGCCGGcGCUg -5'
6345 3' -56.7 NC_001847.1 + 47206 0.67 0.821243
Target:  5'- -cACGCUCAccgcgUgCGCGGCCGCGcCc -3'
miRNA:   3'- ucUGCGAGUaca--AgGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 22503 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 44900 0.67 0.829755
Target:  5'- -aGCGCgUCAcag-CCGCGGCgGCGGCc -3'
miRNA:   3'- ucUGCG-AGUacaaGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 51899 0.67 0.829755
Target:  5'- -cGCGCUUucgGccgCCGCcccGGCCGCGGCg -3'
miRNA:   3'- ucUGCGAGua-Caa-GGUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99445 0.67 0.829755
Target:  5'- cGGCGcCUCc---UCCACGGCCGCcaGCa -3'
miRNA:   3'- uCUGC-GAGuacaAGGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 104331 0.67 0.803706
Target:  5'- cGcCGC-CGUGUuugCCGCGGCgGCaGACg -3'
miRNA:   3'- uCuGCGaGUACAa--GGUGCCGgCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 116668 0.67 0.794699
Target:  5'- uGGugGCcugCGUGUgggUCCggcgcuGCGGgCGCGGCa -3'
miRNA:   3'- -UCugCGa--GUACA---AGG------UGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47847 0.67 0.794699
Target:  5'- -cGCGCaaaUCGg---CCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCG---AGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 88654 0.67 0.803706
Target:  5'- -aACGCUCGg---CCAC-GCUGCGACg -3'
miRNA:   3'- ucUGCGAGUacaaGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 74386 0.67 0.803706
Target:  5'- gAGGCGCUgGgGgaCCgcGCGGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAgUaCaaGG--UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 77894 0.67 0.812558
Target:  5'- -cGCGCUC-UGcgCgGCGGCgGUGGCg -3'
miRNA:   3'- ucUGCGAGuACaaGgUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 78334 0.67 0.812558
Target:  5'- cGGGCccgGCUUggGcgCCGCGGCgGCGAa -3'
miRNA:   3'- -UCUG---CGAGuaCaaGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 63663 0.67 0.812558
Target:  5'- aAGAucUGCUCAUGc-UCGCGGCCGCc-- -3'
miRNA:   3'- -UCU--GCGAGUACaaGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 134477 0.67 0.781841
Target:  5'- uAGGCGCggccaacgaagugCAcggguguagugUGggCCguGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa------------GU-----------ACaaGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 99686 0.67 0.785543
Target:  5'- -aGCGcCUCucgcgCCGCGGCCGCGuCg -3'
miRNA:   3'- ucUGC-GAGuacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 102813 0.67 0.794699
Target:  5'- cAGGCccGCgaucgCGUGUUCCAgCGGgucccguuCCGCGGCg -3'
miRNA:   3'- -UCUG--CGa----GUACAAGGU-GCC--------GGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.