miRNA display CGI


Results 101 - 120 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 28170 0.67 0.829755
Target:  5'- gAGGCGC-CGUuggGUUaCCugGCGGCCGCG-Cg -3'
miRNA:   3'- -UCUGCGaGUA---CAA-GG--UGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 45860 0.67 0.821243
Target:  5'- gAGGC-CUCGg---CCGCGGCgCGCGAa -3'
miRNA:   3'- -UCUGcGAGUacaaGGUGCCG-GCGCUg -5'
6345 3' -56.7 NC_001847.1 + 69417 0.67 0.785543
Target:  5'- cGGCGC---UGUUCCuGCGGCucagCGCGGCg -3'
miRNA:   3'- uCUGCGaguACAAGG-UGCCG----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 132010 0.67 0.829755
Target:  5'- cGGCGCcgCcgGgcUCCcggugcucuCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGa-GuaCa-AGGu--------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 47557 0.67 0.829755
Target:  5'- cGGGCGCggg-GagCCcgGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCGaguaCaaGG--UGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 100648 0.67 0.829755
Target:  5'- cGGCGC-CA-GggCCGCGcuGCUGCGGCg -3'
miRNA:   3'- uCUGCGaGUaCaaGGUGC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 125316 0.67 0.829755
Target:  5'- cGugGCUCAUGgcggCgGCGGgCCG-GGCc -3'
miRNA:   3'- uCugCGAGUACaa--GgUGCC-GGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 75770 0.67 0.821243
Target:  5'- -cGCGCggGUGaa-CACGGCCGCGGg -3'
miRNA:   3'- ucUGCGagUACaagGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 52992 0.67 0.79379
Target:  5'- gGGACGCgcaggCAUGgcggagCCgacagcgGCGGCCGCuGCg -3'
miRNA:   3'- -UCUGCGa----GUACaa----GG-------UGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 19312 0.67 0.821243
Target:  5'- -aGCGCgg-----CCGCGGCCGUGGCu -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134477 0.67 0.781841
Target:  5'- uAGGCGCggccaacgaagugCAcggguguagugUGggCCguGCGGCCGCGGCg -3'
miRNA:   3'- -UCUGCGa------------GU-----------ACaaGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 94681 0.67 0.785543
Target:  5'- aGGACGCUUAUG--CC-CGuGCCGCG-Ca -3'
miRNA:   3'- -UCUGCGAGUACaaGGuGC-CGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 584 0.67 0.785543
Target:  5'- cGGCGC-CggGUccuggcccUCCGCGGCCGCu-- -3'
miRNA:   3'- uCUGCGaGuaCA--------AGGUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 60626 0.67 0.82722
Target:  5'- uGACGUUgaagacCAUGUUCagcacgagggugcgCGCGGCCGCGuCc -3'
miRNA:   3'- uCUGCGA------GUACAAG--------------GUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 18784 0.68 0.757277
Target:  5'- cGACaGCgCGaGcUCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUG-CGaGUaCaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 49051 0.68 0.766823
Target:  5'- uGGCGCgCAgc--UCACGGCCGCGGg -3'
miRNA:   3'- uCUGCGaGUacaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 27316 0.68 0.766823
Target:  5'- cGGCGggCGUG-UCCACGGCaaucugccggggCGUGACg -3'
miRNA:   3'- uCUGCgaGUACaAGGUGCCG------------GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33650 0.68 0.74762
Target:  5'- gAGGCGCgcgcgcgCGUGg-CCGCGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGa------GUACaaGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 22865 0.68 0.73786
Target:  5'- cGACGCggcCGUGUg-CACGGCuucguCGCGGCu -3'
miRNA:   3'- uCUGCGa--GUACAagGUGCCG-----GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.