miRNA display CGI


Results 121 - 140 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 74112 0.68 0.776248
Target:  5'- --cCGCUgCcgGUUCC-CGGCCGUGGu -3'
miRNA:   3'- ucuGCGA-GuaCAAGGuGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 86836 0.68 0.770608
Target:  5'- cGAUGUUCGccuacgucaagcccaUGagCCACGGCCcCGACa -3'
miRNA:   3'- uCUGCGAGU---------------ACaaGGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 73014 0.68 0.757277
Target:  5'- cGGGCGCg---GaaCCA-GGCCGCGGCa -3'
miRNA:   3'- -UCUGCGaguaCaaGGUgCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 105098 0.68 0.73786
Target:  5'- -cGCGC-CGgcaacGUcgcCCACGGCCGCGGCc -3'
miRNA:   3'- ucUGCGaGUa----CAa--GGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 12356 0.68 0.73786
Target:  5'- uGGGCcugGCUCGggagcgUCgGCGGCUGCGGCc -3'
miRNA:   3'- -UCUG---CGAGUaca---AGgUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 22865 0.68 0.73786
Target:  5'- cGACGCggcCGUGUg-CACGGCuucguCGCGGCu -3'
miRNA:   3'- uCUGCGa--GUACAagGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33650 0.68 0.74762
Target:  5'- gAGGCGCgcgcgcgCGUGg-CCGCGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGa------GUACaaGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 117021 0.68 0.757277
Target:  5'- uGGGCGCUCcUGUcugCC-CGGCgGgGGCu -3'
miRNA:   3'- -UCUGCGAGuACAa--GGuGCCGgCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 3419 0.68 0.776248
Target:  5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3'
miRNA:   3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 27341 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 124936 0.68 0.728008
Target:  5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 52245 0.68 0.776248
Target:  5'- cGGGCGC-CGcGcgCCGCGGCUuggcuGCGGCg -3'
miRNA:   3'- -UCUGCGaGUaCaaGGUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 71559 0.68 0.728008
Target:  5'- gAGGCGgUCA---UCCACGGCaGCGAg -3'
miRNA:   3'- -UCUGCgAGUacaAGGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 88868 0.68 0.728008
Target:  5'- aAGACGCg---GUgCgCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGaguaCAaG-GUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 9836 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 84224 0.68 0.74762
Target:  5'- --cCGCgagCAcGUuuUCCACGGCCGCG-Cg -3'
miRNA:   3'- ucuGCGa--GUaCA--AGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 24222 0.68 0.74762
Target:  5'- cAGGCGCUCGgcgaucUCCACGuucaGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUaca---AGGUGC----CGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 106232 0.68 0.776248
Target:  5'- cGGCgGCUCAUGg-CCACgcaGGCCGCcACg -3'
miRNA:   3'- uCUG-CGAGUACaaGGUG---CCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 116407 0.68 0.74762
Target:  5'- cGGCGCUC-UGggCCcCgGGCCGCGcGCu -3'
miRNA:   3'- uCUGCGAGuACaaGGuG-CCGGCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.