miRNA display CGI


Results 141 - 160 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 22123 0.68 0.728008
Target:  5'- cGGGCGCgcccUGggCCcgGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGagu-ACaaGG--UGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 58208 0.68 0.761109
Target:  5'- cAGGCGCUCcgGgcggaucugCCcgccgggcggcagcgGCGGCgCGCGACc -3'
miRNA:   3'- -UCUGCGAGuaCaa-------GG---------------UGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 98100 0.68 0.766823
Target:  5'- aAGGCGCcCAUGag-CGCGGCCaCGACc -3'
miRNA:   3'- -UCUGCGaGUACaagGUGCCGGcGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130154 0.68 0.776248
Target:  5'- -cGCGCUUug---CCGCGGCCGCcGCa -3'
miRNA:   3'- ucUGCGAGuacaaGGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 48612 0.68 0.776248
Target:  5'- -cGCGCUCGgccgugccgaUGUgaacgCCGCGGCgGCGGg -3'
miRNA:   3'- ucUGCGAGU----------ACAa----GGUGCCGgCGCUg -5'
6345 3' -56.7 NC_001847.1 + 33650 0.68 0.74762
Target:  5'- gAGGCGCgcgcgcgCGUGg-CCGCGGCcCGCG-Cg -3'
miRNA:   3'- -UCUGCGa------GUACaaGGUGCCG-GCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 24222 0.68 0.74762
Target:  5'- cAGGCGCUCGgcgaucUCCACGuucaGCCGCcGCg -3'
miRNA:   3'- -UCUGCGAGUaca---AGGUGC----CGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 22865 0.68 0.73786
Target:  5'- cGACGCggcCGUGUg-CACGGCuucguCGCGGCu -3'
miRNA:   3'- uCUGCGa--GUACAagGUGCCG-----GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 88868 0.68 0.728008
Target:  5'- aAGACGCg---GUgCgCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGCGaguaCAaG-GUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18784 0.68 0.757277
Target:  5'- cGACaGCgCGaGcUCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUG-CGaGUaCaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 112649 0.68 0.751496
Target:  5'- cGcCGC-CAUGagCCACGGCCagccuugccccaccuGCGACg -3'
miRNA:   3'- uCuGCGaGUACaaGGUGCCGG---------------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 68765 0.68 0.776248
Target:  5'- cGACGCUgugGUaggcgagcUCCAUcGCCGCGGCg -3'
miRNA:   3'- uCUGCGAguaCA--------AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 84974 0.68 0.775311
Target:  5'- -cACGCUCGUGc-UCAUGGCCGCcucgaucGACa -3'
miRNA:   3'- ucUGCGAGUACaaGGUGCCGGCG-------CUG- -5'
6345 3' -56.7 NC_001847.1 + 132550 0.68 0.766823
Target:  5'- cGGCggGCUCGcGU---GCGGCCGCGGCg -3'
miRNA:   3'- uCUG--CGAGUaCAaggUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 134233 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33104 0.69 0.687855
Target:  5'- -aGCGCUCGcgccauccUGgccgaCCGCGGCgGCGGCg -3'
miRNA:   3'- ucUGCGAGU--------ACaa---GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27504 0.69 0.697986
Target:  5'- gAGGC-CUCGgccgccgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGcGAGUacaa---GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 21720 0.69 0.677678
Target:  5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3'
miRNA:   3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 106419 0.69 0.708062
Target:  5'- cGACGCUgc----CCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGCGAguacaaGGUGCCGGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.