miRNA display CGI


Results 161 - 180 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 30021 0.69 0.708062
Target:  5'- -aGCGCUgGccgcgUCUAUGGCCGCGGCc -3'
miRNA:   3'- ucUGCGAgUaca--AGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 90260 0.69 0.718072
Target:  5'- uGACGCgcucGUUCaCGCGGCCuuugaGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAG-GUGCCGG-----CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 83217 0.69 0.718072
Target:  5'- uGGGCccguGUUUGUGUUugacgCCGCGGCCGgGGCg -3'
miRNA:   3'- -UCUG----CGAGUACAA-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 72412 0.69 0.691914
Target:  5'- cGACGCggggacggCCACGGCCGCaACg -3'
miRNA:   3'- uCUGCGaguacaa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 613 0.69 0.68379
Target:  5'- cGACGCgcccCGUGUaccaccacaugcgCCGCGGCCGC-ACg -3'
miRNA:   3'- uCUGCGa---GUACAa------------GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 134233 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 20449 0.69 0.718072
Target:  5'- cGGCGCggaagGcgUCCAgcaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGagua-Ca-AGGUg--CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 27504 0.69 0.697986
Target:  5'- gAGGC-CUCGgccgccgCCGCGGCgGCGGCg -3'
miRNA:   3'- -UCUGcGAGUacaa---GGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 63992 0.69 0.708062
Target:  5'- cGGCGCUCAaGUgCCGCGaGCUcuacccggGCGGCg -3'
miRNA:   3'- uCUGCGAGUaCAaGGUGC-CGG--------CGCUG- -5'
6345 3' -56.7 NC_001847.1 + 62065 0.69 0.718072
Target:  5'- cGGAUGCgcgCGUcgacUUCCGCGcCCGCGGCg -3'
miRNA:   3'- -UCUGCGa--GUAc---AAGGUGCcGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 71461 0.69 0.677678
Target:  5'- cGGGCGCUUccggGggCaugGCGGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGua--CaaGg--UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 81777 0.69 0.677678
Target:  5'- -cGCGCUCGcgGUgcCCGCGGCCGCcaGCa -3'
miRNA:   3'- ucUGCGAGUa-CAa-GGUGCCGGCGc-UG- -5'
6345 3' -56.7 NC_001847.1 + 107317 0.69 0.708062
Target:  5'- --cCGCUCAUGUcagCCGCGcgugcGCCGgGGCg -3'
miRNA:   3'- ucuGCGAGUACAa--GGUGC-----CGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 106419 0.69 0.708062
Target:  5'- cGACGCUgc----CCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGCGAguacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 113098 0.69 0.705045
Target:  5'- gAGAUGUauacuUCAUGcgcacgcugugcgcUUCCACGGUCGcCGGCg -3'
miRNA:   3'- -UCUGCG-----AGUAC--------------AAGGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 122027 0.69 0.697986
Target:  5'- cGGCGCcgccCGcGcgCCcCGGCCGCGACa -3'
miRNA:   3'- uCUGCGa---GUaCaaGGuGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44940 0.69 0.697986
Target:  5'- gGGGCGCUCGggcUGggCgACGGCgCGCcGCa -3'
miRNA:   3'- -UCUGCGAGU---ACaaGgUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 31420 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 121970 0.69 0.696975
Target:  5'- cGGugGCgugaacugCGUGgcugCCAgcagcccaaccgcCGGCCGCGGCa -3'
miRNA:   3'- -UCugCGa-------GUACaa--GGU-------------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69933 0.69 0.695965
Target:  5'- aAGGCGguaaUCAUGcgcacguuggcgUCCGCGGgCGCGACc -3'
miRNA:   3'- -UCUGCg---AGUACa-----------AGGUGCCgGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.