miRNA display CGI


Results 61 - 80 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 104868 0.71 0.575218
Target:  5'- -aGCGCUUGUGUcgUCUGC-GCCGCGGCg -3'
miRNA:   3'- ucUGCGAGUACA--AGGUGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 33695 0.71 0.575218
Target:  5'- cAGGCGCUCGcgGcgCgGCGGCgCGUGGCc -3'
miRNA:   3'- -UCUGCGAGUa-CaaGgUGCCG-GCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 29231 0.71 0.563054
Target:  5'- cAGACGauccgccacugCAUGgccCCGCGGCCGCGcACg -3'
miRNA:   3'- -UCUGCga---------GUACaa-GGUGCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 27962 0.7 0.636678
Target:  5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3'
miRNA:   3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 70011 0.7 0.671553
Target:  5'- gAGACGCUCAggaagCCGagccccaccgccagcCGaGCCGCGGCu -3'
miRNA:   3'- -UCUGCGAGUacaa-GGU---------------GC-CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 91598 0.7 0.616123
Target:  5'- cGGCGCUCGcGgcggcgcuucUCCucGCGGCUGCGGCu -3'
miRNA:   3'- uCUGCGAGUaCa---------AGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 108642 0.7 0.616123
Target:  5'- cGACGCUgCAgaaGUggCCGgGGCCGCgGACg -3'
miRNA:   3'- uCUGCGA-GUa--CAa-GGUgCCGGCG-CUG- -5'
6345 3' -56.7 NC_001847.1 + 75701 0.7 0.636678
Target:  5'- gAGcCGCUCGgg--CCACgGGCCGCGGg -3'
miRNA:   3'- -UCuGCGAGUacaaGGUG-CCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 33484 0.7 0.616123
Target:  5'- cGAgGCg-AUG-UCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUgCGagUACaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 18926 0.7 0.626399
Target:  5'- uAGugGCagGUGUcuUCCAgCGccGCCGCGGCg -3'
miRNA:   3'- -UCugCGagUACA--AGGU-GC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 119141 0.7 0.636678
Target:  5'- uGGCgaGCUCGUcGgcgCCGCGGCCGCcGCg -3'
miRNA:   3'- uCUG--CGAGUA-Caa-GGUGCCGGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 116157 0.7 0.646955
Target:  5'- gAGGCGCUggcggccgCggGcgCCGCGGCCGCG-Cu -3'
miRNA:   3'- -UCUGCGA--------GuaCaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 1089 0.7 0.657219
Target:  5'- -cACGC-CggGcgCCGCGGCCGCGGg -3'
miRNA:   3'- ucUGCGaGuaCaaGGUGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 103227 0.7 0.657219
Target:  5'- -cGCGCgag----CCGCGGCCGCGGCc -3'
miRNA:   3'- ucUGCGaguacaaGGUGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 130775 0.7 0.636678
Target:  5'- -cGCGCUCgcggucgcgGUGgaggcggCCGCGGCCGgGGCg -3'
miRNA:   3'- ucUGCGAG---------UACaa-----GGUGCCGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 32263 0.7 0.636678
Target:  5'- cAGACGCgugCGUGgcucgcgccgUCCGCGuGgCGCGGCc -3'
miRNA:   3'- -UCUGCGa--GUACa---------AGGUGC-CgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 96374 0.7 0.626399
Target:  5'- gGGACGCUCGUGcUCCagcACGGgcCCGCcGCc -3'
miRNA:   3'- -UCUGCGAGUACaAGG---UGCC--GGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 30691 0.7 0.646955
Target:  5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 99183 0.7 0.657219
Target:  5'- uGGCGCccUCGUGgUCCucgcgcgagGCGGCCGCGcgGCg -3'
miRNA:   3'- uCUGCG--AGUACaAGG---------UGCCGGCGC--UG- -5'
6345 3' -56.7 NC_001847.1 + 76400 0.7 0.626399
Target:  5'- gGGGCGC-CggGggCCGCGGCgGgGGCa -3'
miRNA:   3'- -UCUGCGaGuaCaaGGUGCCGgCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.