miRNA display CGI


Results 81 - 100 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6345 3' -56.7 NC_001847.1 + 18926 0.7 0.626399
Target:  5'- uAGugGCagGUGUcuUCCAgCGccGCCGCGGCg -3'
miRNA:   3'- -UCugCGagUACA--AGGU-GC--CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 96374 0.7 0.626399
Target:  5'- gGGACGCUCGUGcUCCagcACGGgcCCGCcGCc -3'
miRNA:   3'- -UCUGCGAGUACaAGG---UGCC--GGCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 33484 0.7 0.616123
Target:  5'- cGAgGCg-AUG-UCCGCGGCgGCGGCg -3'
miRNA:   3'- uCUgCGagUACaAGGUGCCGgCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 91598 0.7 0.616123
Target:  5'- cGGCGCUCGcGgcggcgcuucUCCucGCGGCUGCGGCu -3'
miRNA:   3'- uCUGCGAGUaCa---------AGG--UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 96958 0.7 0.667463
Target:  5'- cAGGCGCUCuucGUUCgcgggUACGGCCGCu-- -3'
miRNA:   3'- -UCUGCGAGua-CAAG-----GUGCCGGCGcug -5'
6345 3' -56.7 NC_001847.1 + 52937 0.7 0.646955
Target:  5'- uGGCGCg---GUUCgACcgaGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaguaCAAGgUG---CCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 133504 0.7 0.646955
Target:  5'- cAGGCGCaCGUGUaccugcgcgCCGCGgugcuGCCGCGGCg -3'
miRNA:   3'- -UCUGCGaGUACAa--------GGUGC-----CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 21720 0.69 0.677678
Target:  5'- uGGACGCggCGccguUGUUCCccccgacgcuacGCuGCCGCGACg -3'
miRNA:   3'- -UCUGCGa-GU----ACAAGG------------UGcCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 121970 0.69 0.696975
Target:  5'- cGGugGCgugaacugCGUGgcugCCAgcagcccaaccgcCGGCCGCGGCa -3'
miRNA:   3'- -UCugCGa-------GUACaa--GGU-------------GCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 71461 0.69 0.677678
Target:  5'- cGGGCGCUUccggGggCaugGCGGCCGCGAg -3'
miRNA:   3'- -UCUGCGAGua--CaaGg--UGCCGGCGCUg -5'
6345 3' -56.7 NC_001847.1 + 109925 0.69 0.677678
Target:  5'- cGACGCcgaUCAUGcUCUuugcCGGCCGCGcGCg -3'
miRNA:   3'- uCUGCG---AGUACaAGGu---GCCGGCGC-UG- -5'
6345 3' -56.7 NC_001847.1 + 42047 0.69 0.718072
Target:  5'- uAGACugGCUCGUGUgCCugGggcuggugccGCUGCGGCg -3'
miRNA:   3'- -UCUG--CGAGUACAaGGugC----------CGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 107317 0.69 0.708062
Target:  5'- --cCGCUCAUGUcagCCGCGcgugcGCCGgGGCg -3'
miRNA:   3'- ucuGCGAGUACAa--GGUGC-----CGGCgCUG- -5'
6345 3' -56.7 NC_001847.1 + 106419 0.69 0.708062
Target:  5'- cGACGCUgc----CCGCGGCCGCGcCg -3'
miRNA:   3'- uCUGCGAguacaaGGUGCCGGCGCuG- -5'
6345 3' -56.7 NC_001847.1 + 113098 0.69 0.705045
Target:  5'- gAGAUGUauacuUCAUGcgcacgcugugcgcUUCCACGGUCGcCGGCg -3'
miRNA:   3'- -UCUGCG-----AGUAC--------------AAGGUGCCGGC-GCUG- -5'
6345 3' -56.7 NC_001847.1 + 122027 0.69 0.697986
Target:  5'- cGGCGCcgccCGcGcgCCcCGGCCGCGACa -3'
miRNA:   3'- uCUGCGa---GUaCaaGGuGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 44940 0.69 0.697986
Target:  5'- gGGGCGCUCGggcUGggCgACGGCgCGCcGCa -3'
miRNA:   3'- -UCUGCGAGU---ACaaGgUGCCG-GCGcUG- -5'
6345 3' -56.7 NC_001847.1 + 31420 0.69 0.697986
Target:  5'- cGGCGC-CGgcgGgcggcggCCgGCGGCCGCGGCg -3'
miRNA:   3'- uCUGCGaGUa--Caa-----GG-UGCCGGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 69933 0.69 0.695965
Target:  5'- aAGGCGguaaUCAUGcgcacguuggcgUCCGCGGgCGCGACc -3'
miRNA:   3'- -UCUGCg---AGUACa-----------AGGUGCCgGCGCUG- -5'
6345 3' -56.7 NC_001847.1 + 81777 0.69 0.677678
Target:  5'- -cGCGCUCGcgGUgcCCGCGGCCGCcaGCa -3'
miRNA:   3'- ucUGCGAGUa-CAa-GGUGCCGGCGc-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.